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(-) Description

Title :  MECHANISTIC AND STRUCTURAL ANALYSIS OF SUBSTRATE RECOGNITION AND COFACTOR BINDING BY AN UNUSUAL BACTERIAL PROLYL HYDROXYLASE - APO-BAP4H
 
Authors :  N. J. Schnicker, M. Dey
Date :  21 Feb 16  (Deposition) - 27 Apr 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A,B
Keywords :  P4H, Dioxygenase, Cupin, Fe(Ii)/Alpha-Ketoglutarate, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. J. Schnicker, M. Dey
Bacillus Anthracis Prolyl 4-Hydroxylase Modifies Collagen-Like Substrates In Asymmetric Patterns.
J. Biol. Chem. V. 291 13360 2016
PubMed-ID: 27129244  |  Reference-DOI: 10.1074/JBC.M116.725432

(-) Compounds

Molecule 1 - PROCOLLAGEN-PROLINE DIOXYGENASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 18-232
    Gene: BASH2_01493
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:130 , ASN A:141 , ARG A:142 , TYR A:180 , PHE A:181 , ASN A:188 , HOH A:432 , LYS B:68binding site for residue GOL A 301
2AC2SOFTWARELYS A:68 , TYR B:130 , ASN B:141 , ARG B:142 , TYR B:180 , PHE B:181 , GLN B:185 , ASN B:188 , HOH B:423binding site for residue GOL B 301
3AC3SOFTWAREGLU A:37 , PHE B:160 , ASN B:165 , SER B:167binding site for residue PEG B 302
4AC4SOFTWARELYS B:97 , SER B:100 , SER B:101 , VAL B:105 , HOH B:498binding site for residue PEG B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IAT)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Glu A:38 -Pro A:39
2Thr A:80 -Ser A:81
3Glu B:38 -Pro B:39

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IAT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IAT)

(-) Exons   (0, 0)

(no "Exon" information available for 5IAT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee....eeeeeeee....eeeee...hhhhhhhhhhhhhhhhhh........hhhhhh........hhhhhhhhhhhhhhhh.hhhhh...eeeee.......................eeeeeeee.....ee..eee....eee......eeeee....hhhhhhh...ee..eee..eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iat A  11 KEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRDVNDIRTSSGAFLDDNELTAKIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK 216
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210      


Chain B from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee....eeeeeeee....eeeee...hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhh.hhhhh...eeeee..................hhhh.eeeeeeee.....ee..ee.....eee......eeeee....hhhhhhh...ee..eee..eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iat B  12 EQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSSGAFLDDNELTAKIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK 216
                                    21        31        41        51        61        71||      91       101       111       121       131       141       151       161       171       181       191       201       211     
                                                                                       72|                                                                                                                                     
                                                                                        83
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IAT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IAT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IAT)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q81LZ8_BACAN | Q81LZ8: 3itq 5hv0 5hv4 5iav 5iax

(-) Related Entries Specified in the PDB File

5lav 5lax