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(-) Description

Title :  ADENYLOSUCCINATE SYNTHETASE FROM CRYPTOCOCCUS NEOFORMANS COMPLEXED WITH GDP AND IMP
 
Authors :  R. D. Blundell, S. J. Williams, D. Ericsson, J. A. Fraser, B. Kobe
Date :  09 Feb 16  (Deposition) - 24 Aug 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dimer, Adenylosuccinate Synthetase, Purine Metabolism, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. D. Blundell, S. J. Williams, S. D. Arras, J. L. Chitty, K. L. Blake, D. J. Ericsson, N. Tibrewal, J. Rohr, Y. Q. Koh, U. Kappler, A. A. Robertson, M. S. Butler, M. A. Cooper, B. Kobe, J. A. Fraser
Disruption Of De Novo Adenosine Triphosphate (Atp) Biosynthesis Abolishes Virulence In Cryptococcus Neoformans
Acs Infect Dis. V. 2 651 2016
PubMed-ID: 27759389  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00121

(-) Compounds

Molecule 1 - ADENYLOSUCCINATE SYNTHETASE
    Chains: A, B
    EC Number: 6.3.4.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Gene: CNAG_02858
    Organism Scientific: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
    Organism Taxid: 235443
    Strain: H99 / ATCC 208821 / CBS 10515 / FGSC 9487

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GDP2Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2IMP2Ligand/IonINOSINIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:18 , GLU A:19 , GLY A:20 , LYS A:21 , GLY A:22 , LYS A:23 , GLY A:45 , HIS A:46 , LYS A:336 , ASP A:338 , GLY A:418 , VAL A:419 , GLY A:420 , PRO A:421 , HOH A:774 , HOH A:824 , HOH A:830 , HOH A:837 , HOH A:843 , HOH A:871binding site for residue GDP A 501
2AC2SOFTWARETRP A:16 , ASP A:18 , ASN A:43 , ILE A:136 , GLY A:137 , THR A:138 , THR A:139 , ASN A:229 , LEU A:233 , VAL A:243 , THR A:244 , VAL A:278 , ARG A:308 , HOH A:634 , HOH A:645 , HOH A:646 , HOH A:661 , HOH A:717 , ARG B:153binding site for residue IMP A 502
3AC3SOFTWAREASP B:18 , GLU B:19 , GLY B:20 , LYS B:21 , GLY B:22 , LYS B:23 , ALA B:44 , GLY B:45 , HIS B:46 , LYS B:336 , ASP B:338 , GLY B:418 , VAL B:419 , GLY B:420 , PRO B:421 , HOH B:617 , HOH B:646 , HOH B:689 , HOH B:757 , HOH B:758 , HOH B:771 , HOH B:818binding site for residue GDP B 501
4AC4SOFTWAREARG A:153 , TRP B:16 , ASP B:18 , ASN B:43 , GLY B:137 , THR B:138 , THR B:139 , ASN B:229 , LEU B:233 , VAL B:243 , THR B:244 , VAL B:278 , ARG B:308 , HOH B:612 , HOH B:620 , HOH B:641 , HOH B:644 , HOH B:702 , HOH B:707 , HOH B:737binding site for residue IMP B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I34)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:240 -Pro A:241
2Tyr B:240 -Pro B:241

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I34)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I34)

(-) Exons   (0, 0)

(no "Exon" information available for 5I34)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee......hhhhhhhhhhh...eeee........eeeeee.....eeeeee...hhhhhh...eeee....eehhhhhhhhhhhhhhh.......eeee...ee.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..eehhhhhhhhhhhh..eeeee...hhhhh..............hhhhhhhhhh.hhh.eeeeeeeee..eee...........hhhhhhhhhhh...........eee.eehhhhhhhhhhhh..eeeeehhhhhh...eeeeeeeeee..ee......hhhhhhh.eeeeeeee..........hhhhhhhhhhhhhhhhhhhhh..eeeee.......eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i34 A   2 APSPEGVTVVLGAQWGDEGKGKLVDILAAEADICARCAGGNNAGHTIVVRNDKGEKTSYAFNLLPSGLINPECTAFIGSGVVVHVPSLFNELDTLERKGLKVAGRLLVSDRAHLVMGFHQIVDGLKEVELGGSSIGTTRKGIGPAYSSKASRSGLRVHHLFDPTFPAKFRKLVEGRFKRYGHFEFDTEGEIEMYLAFAERLRPFIVDGPTFMHNALSSGKRVLVEGANALMLDLDYGTYPFVTSSSTSIGGVVSGLGISPFAIKRVVGVIKAYTTRVGGGPFPTEDLATVGETLQEVGAEYGTVTGRRRRCGWLDLVVMKYSTMINGYTSLNLTKLDVLDGFEEIKVATGYKIDGVEVEGFPADLDRLAKVEVQYATLPGWKTDISNCKTYEEFPENAKAYIKFIEDYLGVKVQYVGVGPGRDQNVIIF 430
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421         


Chain B from PDB  Type:PROTEIN  Length:413
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......hhhhhhhhhhhhh.eeee.......................eeee....eehhhhhhhhhhhhhhh...hhh.eeee...ee.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..eehhhhhhhhhhhh..eeeee...hhhhh..............hhhhhhhhhh.hhh.eeeeeeeee..eee...........hhhhhhhhhhh...........eee.eehhhhhhhhhhhh..eeeeehhhhhh...eeeeeeeeee..ee......hhhhhhh.eeeeeeee..........hhhhhhhhhhhhhhhhhhhhh..eeeee.......eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i34 B   4 SPEGVTVVLGAQWGDEGKGKLVDILAAEADICARCAGGNNAGHAFNLLPSGLINPECTAFIGSGVVVHVPSLFNELDTLERKGLKVAGRLLVSDRAHLVMGFHQIVDGLKEVELGGSSIGTTRKGIGPAYSSKASRSGLRVHHLFDPTFPAKFRKLVEGRFKRYGHFEFDTEGEIEMYLAFAERLRPFIVDGPTFMHNALSSGKRVLVEGANALMLDLDYGTYPFVTSSSTSIGGVVSGLGISPFAIKRVVGVIKAYTTRVGGGPFPTEDLATVGETLQEVGAEYGTVTGRRRRCGWLDLVVMKYSTMINGYTSLNLTKLDVLDGFEEIKVATGYKIDGVEVEGFPADLDRLAKVEVQYATLPGWKTDISNCKTYEEFPENAKAYIKFIEDYLGVKVQYVGVGPGRDQNVIIF 430
                                    13        23        33        43  ||    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427   
                                                                     46|                                                                                                                                                                                                                                                                                                                                                                                 
                                                                      61
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I34)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I34)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I34)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        J9VI09_CRYNH | J9VI09: 5i33

(-) Related Entries Specified in the PDB File

5i33