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(-) Description

Title :  UNLIGATED ADENYLOSUCCINATE SYNTHETASE FROM CRYPTOCOCCUS NEOFORMANS
 
Authors :  R. D. Blundell, S. J. Williams, D. Ericsson, J. A. Fraser, B. Kobe
Date :  09 Feb 16  (Deposition) - 24 Aug 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dimer, Adenylosuccinate Synthetase, Purine Metabolism, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. D. Blundell, S. J. Williams, S. D. Arras, J. L. Chitty, K. L. Blake, D. J. Ericsson, N. Tibrewal, J. Rohr, Y. Q. Koh, U. Kappler, A. A. Robertson, M. S. Butler, M. A. Cooper, B. Kobe, J. A. Fraser
Disruption Of De Novo Adenosine Triphosphate (Atp) Biosynthesis Abolishes Virulence In Cryptococcus Neoformans
Acs Infect Dis. V. 2 651 2016
PubMed-ID: 27759389  |  Reference-DOI: 10.1021/ACSINFECDIS.6B00121

(-) Compounds

Molecule 1 - ADENYLOSUCCINATE SYNTHETASE
    Chains: A, B
    EC Number: 6.3.4.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PQE30
    Expression System Taxid: 511693
    Gene: CNAG_02858
    Organism Scientific: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
    Organism Taxid: 235443
    Strain: H99 / ATCC 208821 / CBS 10515 / FGSC 9487

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I33)

(-) Sites  (0, 0)

(no "Site" information available for 5I33)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I33)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:240 -Pro A:241
2Tyr B:240 -Pro B:241

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I33)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I33)

(-) Exons   (0, 0)

(no "Exon" information available for 5I33)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.......hhhhhhhhhh...eeeeeee.....eeeee...eeeee...hhhhhh...eeeeeeeeeehhhhhhhhhhhhhh........eeee...ee.hhhhhh.hhhhhhhhhhh....hhhhhhh.hhhhhhh.hhhhhhhhhhh..eehhhhhhhhhhhh..eeeeeeeee.hhh..............hhhhhhhhhh.hhh.eeeeeeeee..eee...........hhhhhhhhhhh...........eee.eehhhhhhhhhhhh..eeeeehhhhhh...eeeeeeeee...........hhhhhhh.eeeeeeee..........hhhhhhhhhhhhhhhhhhhhh..eeeee.......eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5i33 A   5 PEGVTVVLGAQWGDEGKGKLVDILAAEADICARCAGGNNAGHTIVVREKTSYAFNLLPSGLINPECTAFIGSGVVVHVPSLFNELDTLERKGLKVAGRLLVSDRAHLVMGFHQIKGIGPAYSSKASRSGLRVHHLFDPTFPAKFRIEMYLAFAERLRPFIVDGPTFMHNALSSGKRVLVEGANALMLDLDYGTYPFVTSSSTSIGGVVSGLGISPFAIKRVVGVIKAYTTRVGGGPFPTEDLATVGETLQEVGAEYGTVTGRRRRCGWLDLVVMKYSTMINGYTSLNLTKLDVLDGFEEIKVATGYKIDGVEVEGFPADLDRLAKVEVQYATLPGWKTDISNCKTYEEFPENAKAYIKFIEDYLGVKVQYVGVGPGRDQNVIIF 430
                                    14        24        34        44      ||58        68        78        88        98       108       118   ||  146       156       166    || 196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426    
                                                                         51|                                                               122|                           171|                                                                                                                                                                                                                                              
                                                                          56                                                                141                            192                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.......hhhhhhhhhh...eeeeeee.....eeee...eeee...hhhhhh...eeeeeeeeeehhhhhhhhhhhhhh....hhh.eeee...ee.hhhhhh.hhhhhhhhhhh....hhhhhhh.hhhhhhhh..hhhhhhhhh..eehhhhhhhhhhhh..eeeee...hhhhh..............hhhhhhhhhh.hhh.eeeeeeeee..eee...........hhhhhhhhhhh........eee.eehhhhhhhhhhhh..eeeeehhhhhh...eeeeeeeeee..ee......hhhhhhh.eeeeeeee..........hhhhhhhhhhhhhhhhhhhhh..eeeee.......eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i33 B   5 PEGVTVVLGAQWGDEGKGKLVDILAAEADICARCAGGNNAGHTIVVRTSYAFNLLPSGLINPECTAFIGSGVVVHVPSLFNELDTLERKGLKVAGRLLVSDRAHLVMGFHQIKGIGPAYSSKASRSGLRVHHLFDPTFPAKFRKLMYLAFAERLRPFIVDGPTFMHNALSSGKRVLVEGANALMLDLDYGTYPFVTSSSTSIGGVVSGLGISPFAIKRVVGVIKAYTTRVGGGPFPTEDLATVGETLQEVGAEYGGRRRRCGWLDLVVMKYSTMINGYTSLNLTKLDVLDGFEEIKVATGYKIDGVEVEGFPADLDRLAKVEVQYATLPGWKTDISNCKTYEEFPENAKAYIKFIEDYLGVKVQYVGVGPGRDQNVIIF 430
                                    14        24        34        44      ||60        70        80        90       100       110       120 ||    148       158       168    || 198       208       218       228       238       248       258       268       278       288       298    || 311       321       331       341       351       361       371       381       391       401       411       421         
                                                                         51|                                                             122|                             173|                                                                                                          303|                                                                                                                           
                                                                          58                                                              141                              194                                                                                                           307
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I33)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I33)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I33)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Tyr A:240 - Pro A:241   [ RasMol ]  
    Tyr B:240 - Pro B:241   [ RasMol ]  
 

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  5i33
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        J9VI09_CRYNH | J9VI09: 5i34

(-) Related Entries Specified in the PDB File

5i34