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(-) Description

Title :  CRYSTAL STRUCTURE OF SAR11_1068 BOUND TO A SULFOBETAINE (3-(1-METHYLPIPERIDINIUM-1-YL)PROPANE-1-SULFONATE)
 
Authors :  B. E. Clifton, P. D. Carr, C. J. Jackson
Date :  22 Jun 16  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym./Biol. Unit :  A
Keywords :  Solute-Binding Protein, Periplasmic Binding Protein, Transport Protein, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. E. Clifton, J. A. Kaczmarski, P. D. Carr, C. J. Jackson
Crystal Structure Of Sar11_1068 Bound To A Sulfobetaine (3-(1-Methylpiperidinium-1-Yl)Propane-1-Sulfonate)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYCLOHEXADIENYL DEHYDRATASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDOTS7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 19-255
    Gene: PHEC, SAR11_1068
    Organism Scientific: PELAGIBACTER UBIQUE (STRAIN HTCC1062)
    Organism Taxid: 335992
    Strain: HTCC1062

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1KH21Ligand/Ion3-(1-METHYLPIPERIDINIUM-1-YL)PROPANE-1-SULFONATE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:72 , VAL A:90 , THR A:91 , ARG A:96 , HOH A:457binding site for residue KH2 A 301
2AC2SOFTWAREGLN A:168 , ARG A:174binding site for residue SO4 A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KKW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:34 -Pro A:35
2Ser A:162 -Pro A:163

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KKW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KKW)

(-) Exons   (0, 0)

(no "Exon" information available for 5KKW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhheeeeee..ee...eee......eehhhhhhhhhhhhhhh.eeeeee....hhhhhhhh....ee..ee.hhhhhh.eee....eeeeeeeeee.hhh.....hhhhh....eeeee..hhhhhhhhhhh...eeeee....hhhhhhhh....eeeeehhhhhhhhhhh..eee.....eeeeeee.eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kkw A  13 ESKLDQILSSGELKVGTTGDWDPMAMKDPATNKYKGFDIDVMQELAKDMGVKITFVPTEWKTIVSGITAGRYDISTSVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNLKKYSTWKSLNNKDVTIATTLGTSQEEKAKEFFPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKSLL 249
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KKW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KKW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KKW)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4FLR5_PELUB | Q4FLR5: 5hmt

(-) Related Entries Specified in the PDB File

5hmt 5HMT IS THE STRUCTURE OF THE UNLIGANDED PROTEIN.