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(-) Description

Title :  CRYSTAL STRUCTURE OF MEMBRANE ASSOCIATED PATA FROM MYCOBACTERIUM SMEGMATIS IN COMPLEX WITH PALMITATE - P 42 21 2 SPACE GROUP
 
Authors :  D. Albesa-Jove, Z. Svetlikova, A. Carreras-Gonzalez, M. Tersa, E. San Vaello, J. O. Cifuente, K. Mikusova, M. E. Guerin
Date :  02 Dec 15  (Deposition) - 09 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.43
Chains :  Asym./Biol. Unit :  A
Keywords :  Acyltransferase, Glycolipid Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Albesa-Jove, Z. Svetlikova, M. Tersa, E. Sancho-Vaello, A. Carreras-Gonzalez, P. Bonnet, P. Arrasate, A. Eguskiza, S. K. Angala, J. O. Cifuente, J. Kordulakova, M. Jackson, K. Mikusova, M. E. Guerin
Structural Basis For Selective Recognition Of Acyl Chains B The Membrane-Associated Acyltransferase Pata.
Nat Commun V. 7 10906 2016
PubMed-ID: 26965057  |  Reference-DOI: 10.1038/NCOMMS10906

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL MANNOSIDE ACYLTRANSFERASE
    Chains: A
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Expression System Taxid: 246196
    Expression System Vector Type: PLASMID
    Gene: MSMEG_2934, MSMEI_2860
    Organism Scientific: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Organism Taxid: 246196
    Synonym: PIM ACYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1EOH1Ligand/IonETHANOL
2NA1Ligand/IonSODIUM ION
3PLM1Ligand/IonPALMITIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:104 , HIS A:126 , TRP A:130 , ALA A:133 , THR A:146 , ARG A:164 , CYS A:196 , MET A:198 , HOH A:521binding site for residue PLM A 401
2AC2SOFTWARETYR A:80 , TYR A:83 , TRP A:84 , HIS A:284binding site for residue EOH A 402
3AC3SOFTWAREASP A:70binding site for residue NA A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F31)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:152 -Pro A:153

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F31)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F31)

(-) Exons   (0, 0)

(no "Exon" information available for 5F31)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh....eeeee....hhhhhhhhhhhh....eeee....hhhhhhhhhhhhh....eeee......hhhhhhhhhhhh..eeeee.........eeee....eeee.hhhhhhhhhhh.eeeeeeeeee..eeeeee.........hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f31 A  48 GGPEQLRRNLARVVGKPPADVPDDLIRASLASYARYWREAFRLPAMDHGRLGEQLDVIDIDHLWSALDAGRGAVLALPHSGNWDMAGVWLVQNYGPFTTVAERLKPESLYRRFVEYRESLGFEVLPLTGGERPPFEVLAERLTDNRPICLMAERDLTRSGVQVDFFGEATRMPAGPAKLAIETGAALFPVHCWFEGDGWGMRVYPELDTSSGDVTAITQALADRFAANIATYPADWHMLQPQWIADLSDERRARLG 303
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F31)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F31)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F31)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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    Lys A:152 - Pro A:153   [ RasMol ]  
 

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  5f31
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 Related Entries

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UniProtKB/Swiss-Prot
        ACYLT_MYCS2 | A0QWG5: 5f2t 5f2z 5f34

(-) Related Entries Specified in the PDB File

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