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(-) Description

Title :  CRYSTAL STRUCTURE OF MEMBRANE ASSOCIATED PATA FROM MYCOBACTERIUM SMEGMATIS IN COMPLEX WITH PALMITATE - C 2 SPACE GROUP
 
Authors :  D. Albesa-Jove, Z. Svetlikova, A. Carreras-Gonzalez, M. Tersa, E. San Vaello, J. O. Cifuente, K. Mikusova, M. E. Guerin
Date :  02 Dec 15  (Deposition) - 09 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Acyltransferase, Glycolipid Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Albesa-Jove, Z. Svetlikova, M. Tersa, E. Sancho-Vaello, A. Carreras-Gonzalez, P. Bonnet, P. Arrasate, A. Eguskiza, S. K. Angala, J. O. Cifuente, J. Kordulakova, M. Jackson, K. Mikusova, M. E. Guerin
Structural Basis For Selective Recognition Of Acyl Chains B The Membrane-Associated Acyltransferase Pata.
Nat Commun V. 7 10906 2016
PubMed-ID: 26965057  |  Reference-DOI: 10.1038/NCOMMS10906

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL MANNOSIDE ACYLTRANSFERASE
    Chains: A, B
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Expression System Taxid: 246196
    Expression System Vector Type: PLASMID
    Gene: MSMEG_2934, MSMEI_2860
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 246196
    Synonym: PIM ACYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2PLM2Ligand/IonPALMITIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PLM1Ligand/IonPALMITIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PLM1Ligand/IonPALMITIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:104 , LEU A:124 , HIS A:126 , TRP A:130 , ARG A:164 , CYS A:196binding site for residue PLM A 401
2AC2SOFTWAREASP A:255 , SER A:257 , HOH A:520 , HOH A:521 , HOH A:570 , HOH A:623binding site for residue MG A 402
3AC3SOFTWAREVAL B:104 , HIS B:126 , TRP B:130 , ALA B:133 , THR B:146 , ARG B:164 , CYS B:196 , HOH B:506 , HOH B:637binding site for residue PLM B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F2T)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:152 -Pro A:153
2Lys B:152 -Pro B:153

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F2T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F2T)

(-) Exons   (0, 0)

(no "Exon" information available for 5F2T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh...eeeee....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhh..eeeee.........eeeee..eeeee.hhhhhhhhhhh.eeeeeeeeee..eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f2t A  48 GGPEQLRRNLARVVGKPPADVPDDLIRASLASYARYWREAFRLPAMDHGRLGEQLDVIDIDHLWSALDAGRGAVLALPHSGNWDMAGVWLVQNYGPFTTVAERLKPESLYRRFVEYRESLGFEVLPLTGGERPPFEVLAERLTDNRPICLMAERDLTRSGVQVDFFGEATRMPAGPAKLAIETGAALFPVHCWFEGDGWGMRVYPELDTSSGDVTAITQALADRFAANIATYPADWHMLQPQWIADL 294
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       


Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh...eeeee....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh...eeee......hhhhhhhhhhhh..eeeee.........eeeee..eeeee.hhhhhhhhhhh.eeeeeeeeee..eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f2t B  41 ARYAARNGGPEQLRRNLARVVGKPPADVPDDLIRASLASYARYWREAFRLPAMDHGRLGEQLDVIDIDHLWSALDAGRGAVLALPHSGNWDMAGVWLVQNYGPFTTVAERLKPESLYRRFVEYRESLGFEVLPLTGGERPPFEVLAERLTDNRPICLMAERDLTRSGVQVDFFGEATRMPAGPAKLAIETGAALFPVHCWFEGDGWGMRVYPELDTSSGDVTAITQALADRFAANIATYPADWHMLQPQWIADLSDERRARL 302
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F2T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F2T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F2T)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        ACYLT_MYCS2 | A0QWG5: 5f2z 5f31 5f34

(-) Related Entries Specified in the PDB File

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