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(-) Description

Title :  STRUCTURE OF THE MEMBRANE-BINDING DOMAIN OF PNEUMOLYSIN
 
Authors :  J. E. Marshall, B. H. A. Faraj, A. R. Gingras, R. Lonnen, M. A. Sheikh, M. E Mezgueldi, P. C. E. Moody, P. W. Andrew, R. Wallis
Date :  22 Jul 15  (Deposition) - 16 Sep 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A,D
Biol. Unit 1:  D  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Toxin, Cholesterol-Dependent Cytolysin, Virulence Factor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. E. Marshall, B. H. Faraj, A. R. Gingras, R. Lonnen, M. A. Sheikh, M. El-Mezgueldi, P. C. Moody, P. W. Andrew, R. Wallis
The Crystal Structure Of Pneumolysin At 2. 0 Angstrom Resolution Reveals The Molecular Packing Of The Pre-Pore Complex.
Sci Rep V. 5 13293 2015
PubMed-ID: 26333773  |  Reference-DOI: 10.1038/SREP13293

(-) Compounds

Molecule 1 - PNEUMOLYSIN
    Chains: D, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Fragment: DOMAIN 4, UNP RESIDUES 359-471
    Gene: PLY
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AD
Biological Unit 1 (1x):  D
Biological Unit 2 (1x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5CR8)

(-) Sites  (0, 0)

(no "Site" information available for 5CR8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CR8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala D:406 -His D:407
2Ala A:406 -His A:407

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5CR8)

(-) Sequences/Alignments

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   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....eeeeeeeeeeeee...eeeeeeee...........eeeeeee...eeeeeeeeeeee.....eeeeeeeeeee....eeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 5cr8 A 359 RNGDLLLDHSGAYVAQYYITWNELSYDHQGKEVLTPKAWDRNGQDLTAHFTTSIPLKGNVRNLSVKIRECTGLAWEWWRTVYEKTDLPLVRKRTISIWGTTLYPQVEDKVEND 471
                                   368       378       388       398       408       418       428       438       448       458       468   


Chain D from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....eeeeeeeeeeee.....eeeeeee...........eeeeeee...eeeeeeeeeeeee...eeeeeeeeeeee....eeeeeeee....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 5cr8 D 359 RNGDLLLDHSGAYVAQYYITWNELSYDHQGKEVLTPKAWDRNGQDLTAHFTTSIPLKGNVRNLSVKIRECTGLAWEWWRTVYEKTDLPLVRKRTISIWGTTLYPQVEDKVEND 471
                                   368       378       388       398       408       418       428       438       448       458       468
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CR8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CR8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CR8)

(-) Gene Ontology  (10, 12)

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  Cis Peptide Bonds
    Ala A:406 - His A:407   [ RasMol ]  
    Ala D:406 - His D:407   [ RasMol ]  
 
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 Related Entries

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        TACY_STRP2 | Q04IN8: 4zgh 5aod 5aoe 5aof 5cr6 5ly6

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