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(-) Description

Title :  CRYSTAL STRUCTURE OF PNEUMOLYSIN DELETION MUTANT DELTA146_147.
 
Authors :  K. Van Pee, O. Yildiz
Date :  10 Sep 15  (Deposition) - 05 Oct 16  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Toxin, Cholesterol Dependent Cytolysin, Pore Forming Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Van Pee, A. Neuhaus, E. D'Imprima, D. J. Mills, W. Kuhlbrandt, O. Yildiz
Cryoem Structures Of Membrane Pore And Prepore Complex Reveal Cytolytic Mechanism Of Pneumolysin.
Elife V. 6 2017
PubMed-ID: 28323617  |  Reference-DOI: 10.7554/ELIFE.23644

(-) Compounds

Molecule 1 - PNEUMOLYSIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET15B
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 1313
    Synonym: THIOL-ACTIVATED CYTOLYSIN, CHOLESTEROL DEPENDENT CYTOLYSIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5AOF)

(-) Sites  (0, 0)

(no "Site" information available for 5AOF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AOF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:404 -His A:405

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AOF)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOL_CYTOLYSINSPS00481 Thiol-activated cytolysins signature.TACY_STRP2426-437  1A:424-435

(-) Exons   (0, 0)

(no "Exon" information available for 5AOF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:488
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhh...hhhhhheee..........eeee...eeeeeeeeeeeeeeee..ee.............eee.hhhhhh............eeeeee.........eeee...hhhhhhhhhhhhhhhhhhhh........eeeeee..hhhhhhhhhh..hhhhhhhhh.hhhhhhh...eeeeeeeeeeeeeeee....hhhhh.....hhhhhhhh.......eeeeeeeeeeeeeeeeeee.....hhhhhhhhhhh.......hhhhhhhhheeeeeeee........eeeeehhhhhhhhhhhh.........eeeeeeeee........eeeeeeeeeeeeeeee.eeeeeee.....eeeeeeeeeeee.....eeeeeee...........eeeeeee...eeeeeeeeeee.......eeeeeeeeee....eeeeeeee....eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aof A -17 AAHHHHHHSSGLVPRGSHMANKAVNDFILAMNYDKKKLLTHQGESIENRFIKEGNQLPDEFVVIERKKRSLSTNTSDISVTATNDSRLYPGALLVVDETLLENNPTLLAVDRAPMTYSIDLPGLASSDSFLQVEDPSNSSVRGAVNDLLAKWHQDYGQVNNVPMQYEKITAHSMEQLKVKFGSDFEKTGNSLDIDFNSVHSGEKQIQIVNFKQIYYTVSVDAVKNPGDVFQDTVTVEDLKQRGISAERPLVYISSVAYGRQVYLKLETTSKSDEVEAAFEALIKGVKVAPQTEWKQILDNTEVKAVILGGDPSSGARVVTGKVDMVEDLIQEGSRFTADHPGLPISYTTSFLRDNVVATFQNSTDYVETKVTAYRNGDLLLDHSGAYVAQYYITWDELSYDHQGKEVLTPKAWDRNGQDLTAHFTTSIPLKGNVRNLSVKIRECTGLAWEWWRTVYEKTDLPLVRKRTISIWGTTLYPQVEDKVENAA 470
                                    -8         2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AOF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AOF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AOF)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:404 - His A:405   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TACY_STRP2 | Q04IN8: 4zgh 5aod 5aoe 5cr6 5cr8 5ly6

(-) Related Entries Specified in the PDB File

5aod CRYSTAL STRUCTURE OF WILD TYPE PNEUMOLYSIN.
5aoe CRYSTAL STRUCTURE OF PNEUMOLYSIN D168A MUTANT.