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(-)Asym./Biol. Unit
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(-) Description

Title :  CRYSTAL STRUCTURE OF SCHEFFERSOMYCES STIPITIS RAI1
 
Authors :  V. Y. Wang, L. Tong
Date :  03 Jun 15  (Deposition) - 08 Jul 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rai1, Decapping, Mrna 5'-Processing, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Y. Wang, X. Jiao, M. Kiledjian, L. Tong
Structural And Biochemical Studies Of The Distinct Activity Profiles Of Rai1 Enzymes.
Nucleic Acids Res. V. 43 6596 2015
PubMed-ID: 26101253  |  Reference-DOI: 10.1093/NAR/GKV620

(-) Compounds

Molecule 1 - SSRAI1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PICST_55876
    Organism Common: YEAST
    Organism Scientific: SCHEFFERSOMYCES STIPITIS (STRAIN ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
    Organism Taxid: 322104
    Strain: ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5BTO)

(-) Sites  (0, 0)

(no "Site" information available for 5BTO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BTO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BTO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BTO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BTO)

(-) Exons   (0, 0)

(no "Exon" information available for 5BTO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:377
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee..............eeeeeeee.....ee.hhhhhhhhh..ee........hhhhh...hhhhh..hhhhhhhhhhhhhhhhh........eeeehhhhhhhhhhhhh....eeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhh.......eeeeeeeeee..eeeeeeee..ee....hhhh.eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.....eeeeeeee..hhhhhhhh..........hhhhhhhhhhhhhhhhhhhh.......eeeeeee....eeeeee.hhhhhhhhhh....hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bto A  -6 LVPAGSHMMKTLSLQSRAKTTALKQPKEIFAFARDIDGEFVYDQKIVKDENVSYYYLSIDLQAGYAKFKKIPEEKNMSDMKCLLTALTKYEQEHNNGEKVNVDIITYRGLMTKLLALPYNLNDPVDLNVLAYDGQLFINSDEEIELARRKEEDEHKQQSMTPEKYDHMKRCEFSGYKFEAIATLPKPWADCSMVNNYEQYISVIKTGIGEAKMLLAGEVDCVWDYIDVLSHYMELKTTRILESNGQVVNFEKKLFKTWAQCFLMGIRKVVYGFRDDSFFLRDVELYKTEEIPLLIKNNALTESGGKINCTTALKWYGAVIEWLLQEIPRDDTSKAYRVSFDPSTRTFTLRELMGNENSRLRNGEMLTSEFKQWRESI 394
                                     3        13        23        33        43      ||60        70        80        90       100       110       120       130       140       150       160       170       180       190 ||    210       220       230     ||245       255       265       275       285       295       305       315 ||    327       337       347       357       367       377       387       
                                                                                   50|                                                                                                                                   192|                              236|                                                                        317|                                                                          
                                                                                    58                                                                                                                                    203                               242                                                                         320                                                                          


Chain B from PDB  Type:PROTEIN  Length:377
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee........eeeeeeee.....ee.hhhhhhhhh.eee..hhhhh........hhhhh...hhhhh..hhhhhhhhhhhhhhhhh........eeeehhhhhhhhhhhhh....eeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhh..........eeeeeeeeee..eeeeeeee..ee.........hhhh.eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.....eeeeeeee..hhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee......eeeee.hhhhhhhhhh....hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bto B   2 MKTLSLQSRAQPKEIFAFARDIDGEFVYDQKIVKDENVSYYYLPDSKIDGSIDLQAGYAKFKKIPEEKNMSDMKCLLTALTKYEQEHNNGEKVNVDIITYRGLMTKLLALPYNLNDPVDLNVLAYDGQLFINSDEEIELARRKEEDEHKQQSMTPEKYDHMKRCEFSGYKFEAIATLPKPWADCSRQQIDKRGKKMVNNYEQYISVIKTGIGEAKMLLAGEVDCVWDYIPEDGKDVLSHYMELKTTRILESNGQVVNFEKKLFKTWAQCFLMGIRKVVYGFRDDSFFLRDVELYKTEEIPLLIKGKINCTTALKWYGAVIEWLLQEIPRDDTSKAYRVSFDPSTRTFTLRELMGNENSRLRNGEMLTSEFKQWRESI 394
                                    11|       27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307   ||  327       337       347       357       367       377       387       
                                    11|                                                                                                                                                                                                                                                                                                  311|                                                                        
                                     18                                                                                                                                                                                                                                                                                                   322
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BTO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BTO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BTO)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A3LNL5_PICST | A3LNL5: 5ulj

(-) Related Entries Specified in the PDB File

5btb 5bte 5bth