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(-) Description

Title :  CRYSTAL STRUCTURE OF ASHBYA GOSSYPII RAI1
 
Authors :  V. Y. Wang, L. Tong
Date :  02 Jun 15  (Deposition) - 08 Jul 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Rai1, Decapping, Mrna 5' Processing, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Y. Wang, X. Jiao, M. Kiledjian, L. Tong
Structural And Biochemical Studies Of The Distinct Activity Profiles Of Rai1 Enzymes.
Nucleic Acids Res. V. 43 6596 2015
PubMed-ID: 26101253  |  Reference-DOI: 10.1093/NAR/GKV620

(-) Compounds

Molecule 1 - AFR263CP
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AGOS_AFR263C
    Organism Common: YEAST
    Organism Scientific: ASHBYA GOSSYPII (STRAIN ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
    Organism Taxid: 284811
    Strain: ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:66 , GLN A:67 , ASP A:68 , GLU A:72 , ARG A:151 , PHE A:220 , ARG A:269 , HOH A:540 , HOH A:551 , HOH A:567 , HOH A:695 , HOH A:711binding site for residue SO4 A 401
2AC2SOFTWARETRP A:154 , LYS A:240 , ARG A:275 , GLU A:277 , HOH A:538 , HOH A:579 , HOH A:586binding site for residue SO4 A 402
3AC3SOFTWAREGLY A:62 , ALA A:63 , ARG A:64 , LYS A:65 , HOH A:532 , HOH A:548binding site for residue SO4 A 403
4AC4SOFTWAREPHE A:105 , ARG A:106 , GLY A:107 , LYS A:198 , ALA A:214 , GLU A:215 , HOH A:621binding site for residue SO4 A 404
5AC5SOFTWARELYS A:110 , ARG A:111 , HIS A:114 , HOH A:536 , HOH A:590binding site for residue SO4 A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BTB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BTB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BTB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BTB)

(-) Exons   (0, 0)

(no "Exon" information available for 5BTB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..........eeeeeeeee...eeee.......ee..hhhhhhh............hhhhhh......hhhhhhhhhhhhhhhh......eeeehhhhhhhhhh....hhhh.eeeeeee..eeeeee.............hhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhh......eeeeeeeeee..eeeeeeee..ee.........hhh.eeeeeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeeee.....eeeeeeee.hhhhhhh.hhhhhhhhhhhhhhhhh....hhhhh..eeeeeee..eeeeeee.hhhhhhh....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5btb A   5 SELLLQATTALKQPKELGYYSTNVGGELKVMDESNLSYYYLPDADIEKHIDLSAGARKFQDEQAEAEDDTGSLHGLLQTLMEYERRKSKKVNADIIAFRGQVKRLIHCAFGGHATDVDMYVMSFDGQLFIRAARKKLEFPTSPRESWAYLAYYSGYKFERMALLDRPVAETPREVLESRGKQVVRNGPQYKTVVRTGVGEHKLVLGAEVDGIFDFREPTGDNLKHYVELKVAKKVQTLKDATNFEQKLFSVWLQCFLVGINRVIIGFRDEKFVLKSVEEFSTSEIPLLLNACVDAIKWYGALTKWLCELPRGPEDDFKLYRLSCSRGALHLRQLHDEDLANGDDIIPGWFREWRRSLS 371
                                 || 17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       303       313       323       333       343       353       363        
                                10|                                                                                                                                                                                                                                                                                       296|                                                                    
                                 14                                                                                                                                                                                                                                                                                        303
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BTB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BTB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BTB)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5BTB)

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        Q753P9_ASHGO | Q753P9: 5bte

(-) Related Entries Specified in the PDB File

5bte 5bth 5bto