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(-) Description

Title :  CRYSTAL STRUCTURE OF QUORUM-SENSING TRANSCRIPTIONAL ACTIVATOR FROM YERSINIA ENTEROCOLITICA
 
Authors :  Y. Kim, G. Chhor, R. Jedrzejczak, S. C. Winans, W. F. Anderson, A. Joachi Center For Structural Genomics Of Infectious Diseases (Csgi
Date :  26 Jul 16  (Deposition) - 07 Sep 16  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Alpha-Beta Structure, Pheromone Binding Protein, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, G. Chhor, R. Jedrzejczak, S. C. Winans, A. Joachimiak, Csgid
Crystal Structure Of Quorum-Sensing Transcriptional Activator From Yersinia Enterocolitica
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - QUORUM-SENSING TRANSCRIPTIONAL ACTIVATOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCG81
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YENR, ERS137951_02004
    Organism Scientific: YERSINIA ENTEROCOLITICA
    Organism Taxid: 630

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 23)

Asymmetric Unit (4, 23)
No.NameCountTypeFull Name
1ACY5Ligand/IonACETIC ACID
2EDO6Ligand/Ion1,2-ETHANEDIOL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO44Ligand/IonSULFATE ION
Biological Unit 1 (4, 23)
No.NameCountTypeFull Name
1ACY5Ligand/IonACETIC ACID
2EDO6Ligand/Ion1,2-ETHANEDIOL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO44Ligand/IonSULFATE ION
Biological Unit 2 (4, 46)
No.NameCountTypeFull Name
1ACY10Ligand/IonACETIC ACID
2EDO12Ligand/Ion1,2-ETHANEDIOL
3MSE16Mod. Amino AcidSELENOMETHIONINE
4SO48Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:13 , LYS A:16 , ARG A:21 , LYS A:24binding site for residue SO4 A 201
02AC2SOFTWAREASP A:84 , ASN A:85 , SER A:86 , HOH A:302 , HOH A:308binding site for residue SO4 A 202
03AC3SOFTWAREASN A:17 , TYR A:18 , ARG A:21 , ARG A:22 , HOH A:303binding site for residue SO4 A 203
04AC4SOFTWARETYR A:18 , ARG A:22 , LYS B:60binding site for residue SO4 A 204
05AC5SOFTWARESER A:32 , ASP A:67 , ILE A:70 , ASN A:125binding site for residue ACY A 205
06AC6SOFTWAREILE A:142 , ASN A:143 , GLU A:145 , LYS A:146binding site for residue ACY A 206
07AC7SOFTWARELYS A:16 , LYS A:24binding site for residue EDO A 207
08AC8SOFTWARELYS A:74 , ASN B:117binding site for residue EDO B 201
09AC9SOFTWAREASN A:108 , ASN A:128 , SER A:133 , ARG B:21binding site for residue ACY B 202
10AD1SOFTWARESER B:32 , TRP B:54 , TYR B:58 , ASP B:67 , ILE B:70 , ACY B:208binding site for residue ACY B 203
11AD2SOFTWAREASP A:75 , LYS A:76 , ASP B:116 , ASN B:117 , SER B:118 , HOH B:301 , HOH B:319binding site for residue EDO B 204
12AD3SOFTWARETYR B:18 , ARG B:22 , HOH B:333binding site for residue EDO B 205
13AD4SOFTWAREASN B:105 , VAL B:107 , ASN B:108 , ASN B:128binding site for residue EDO B 206
14AD5SOFTWARETHR B:40 , LEU B:42 , ASP B:83 , ASN B:108 , GLY B:109 , ASP B:137 , HOH B:314binding site for residue EDO B 207
15AD6SOFTWAREASP B:67 , VAL B:69 , PHE B:98 , ACY B:203binding site for residue ACY B 208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L07)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L07)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L07)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L07)

(-) Exons   (0, 0)

(no "Exon" information available for 5L07)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh.eeeeeeeee.......eeee..hhhhhhhhhhhhhhhhhhhhhhhh.....ee..hhhhhh...hhhhhhhhh....eeeeeee....eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l07 A   5 YFDNESINEDIKNYIQRRIKAYGDLRYSYLVmNKKTPLHPTIISNYPLDWVKKYKKNSYHLIDPVILTAKDKVAPFAWDDNSVINKKSAVFKLAREYNIVNGYTFVLHDNSNNmATLNISNGSDDSISFDESIEINKEKIQmLLILTHEKmLGLYQSNSDKN 169
                                    14        24        34 |      44        54        64        74        84      ||97       107       117   |   127       137       147 |     157|      167  
                                                          36-MSE                                                 91|                       121-MSE                     149-MSE  158-MSE       
                                                                                                                  95                                                                          


Chain B from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh.eeeeeeeee.......eeee..hhhhhhhhhhhhhhhhhhhhhhhh.....ee..hhhhhhh...hhhhhhhhh....eeeeeee....eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l07 B   5 YFDNESINEDIKNYIQRRIKAYGDLRYSYLVmNKKTPLHPTIISNYPLDWVKKYKKNSYHLIDPVILTAKDKVAPFAWDDNSVINKKSSAVFKLAREYNIVNGYTFVLHDNSNNmATLNISNGSDDSISFDESIEINKEKIQmLLILTHEKmLGLYQSNSDKN 169
                                    14        24        34 |      44        54        64        74        84       |96       106       116    |  126       136       146  |    156 |     166   
                                                          36-MSE                                                  92|                       121-MSE                     149-MSE  158-MSE       
                                                                                                                   95
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L07)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L07)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L07)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5L07)

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5l09