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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROLYL 4-HYDROXYLASE COMPLEXED WITH ALPHA-KETOGLUTARATE FROM THE PATHOGENIC BACTERIUM BACILLUS ANTHRACIS IN C2221
 
Authors :  N. J. Schnicker, M. Dey
Date :  28 Jan 16  (Deposition) - 04 May 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  P4H, Dioxygenase, Cupin, Fe(Ii)/Alpha-Ketoglutarate, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. J. Schnicker, M. Dey
Structural Analysis Of Cofactor Binding For A Prolyl 4-Hydroxylase From The Pathogenic Bacterium Bacillus Anthracis.
Acta Crystallogr D Struct V. 72 675 2016 Biol
PubMed-ID: 27139630  |  Reference-DOI: 10.1107/S2059798316004198

(-) Compounds

Molecule 1 - 2OG-FE(II) OXYGENASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GBAA_4459, AB163_21210, AB164_16730, AB165_11640, AB166_03610, AB167_21505, AB168_05660, AB169_05325, AB170_09560, AB171_10145, AB893_21665, ADK17_22720, ADK18_21540, ADT20_05380, ADT21_14515, BF27_3254
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Synonym: 2OG-FE(II) OXYGENASE SUPERFAMILY PROTEIN,PROLYL 4- HYDROXYLASE,ALPHA SUBUNIT DOMAIN PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1AKG1Ligand/Ion2-OXOGLUTARIC ACID
2CD5Ligand/IonCADMIUM ION
3K6Ligand/IonPOTASSIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1AKG2Ligand/Ion2-OXOGLUTARIC ACID
2CD-1Ligand/IonCADMIUM ION
3K-1Ligand/IonPOTASSIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:127 , ASP A:129 , HIS A:193 , AKG A:306binding site for residue CD A 301
02AC2SOFTWAREASP A:17 , ASN A:104 , HOH A:401 , HOH A:414binding site for residue CD A 302
03AC3SOFTWAREHIS A:18 , HOH A:461 , HOH A:499binding site for residue CD A 303
04AC4SOFTWAREHIS A:109 , ASP A:121binding site for residue CD A 304
05AC5SOFTWAREGLU A:55binding site for residue CD A 305
06AC6SOFTWARETHR A:159 , GLY A:195 , LYS A:203 , ILE A:205 , THR A:207 , TRP A:209 , CD A:301binding site for residue AKG A 306
07AC7SOFTWAREASP A:54 , LYS A:172binding site for residue K A 307
08AC8SOFTWAREASP A:184 , SER A:186binding site for residue K A 308
09AC9SOFTWAREHIS A:114binding site for residue K A 309
10AD1SOFTWAREGLU A:119 , GLU A:202 , HOH A:417binding site for residue K A 310
11AD2SOFTWAREGLU A:26 , GLU A:154 , HOH A:410binding site for residue K A 311
12AD3SOFTWAREHIS A:134binding site for residue K A 312

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HV4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:38 -Pro A:39

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HV4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HV4)

(-) Exons   (0, 0)

(no "Exon" information available for 5HV4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eee....eeeeeeee....eeeee...hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhh...eeeee.....eeee.......hhhhhh.eeeeeeee.....ee..eeehhhheee......eeeee....hhhhhhh..eee..eee..eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hv4 A   3 TNNNQIEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLAAFLDDNELTAKIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNLSVHPRKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK 216
                                 || 15        25        35        45        55        65|       93       103       113       123       133       143       153       163       173       183       193       203       213   
                                 8|                                                   65|                                                                                                                                    
                                 12                                                    84
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HV4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HV4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HV4)

(-) Gene Ontology  (7, 7)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q81LZ8_BACAN | Q81LZ8: 3itq 5hv0 5iat 5iav 5iax

(-) Related Entries Specified in the PDB File

5hv0