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(-) Description

Title :  CRYSTAL STRUCTURE OF ANKB ANKYRIN REPEATS (R1-R9) IN COMPLEX WITH NAV1.2 ANKYRIN BINDING DOMAIN
 
Authors :  Z. Wei, C. Wang, M. Zhang
Date :  18 Oct 14  (Deposition) - 26 Nov 14  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Ank Repeat, Protein-Protein Interaction, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Wang, Z. Wei, K. Chen, F. Ye, C. Yu, V. Bennett, M. Zhang
Structural Basis Of Diverse Membrane Target Recognitions By Ankyrins.
Elife V. 3 04353 2014
PubMed-ID: 25383926  |  Reference-DOI: 10.7554/ELIFE.04353

(-) Compounds

Molecule 1 - NAV1.2 - ANKB CHIMERA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET32M
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ANK2, SCN2A, SCN2A1
    Organism Common: MOUSE, HUMAN
    Organism Scientific: MUS MUSCULUS, HOMO SAPIENS
    Organism Taxid: 10090, 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 2 (1, 14)
No.NameCountTypeFull Name
1SO414Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:1128 , ASN A:2141 , GLY A:2174 , ASN A:2176 , GLN A:2177 , HOH A:2521BINDING SITE FOR RESIDUE SO4 A 2401
2AC2SOFTWAREVAL A:1121 , GLY A:1122 , LYS A:2096 , ASN A:2129 , PHE A:2131 , HOH A:2511 , HOH A:2535BINDING SITE FOR RESIDUE SO4 A 2402
3AC3SOFTWAREHIS A:2076 , VAL A:2077 , GLY A:2078 , LEU A:2079BINDING SITE FOR RESIDUE SO4 A 2403
4AC4SOFTWAREGLY A:2108 , GLN A:2109 , ALA A:2110 , GLU A:2111 , HOH A:2514 , HOH A:2574BINDING SITE FOR RESIDUE SO4 A 2404
5AC5SOFTWAREASN A:2141 , HIS A:2142 , ILE A:2143 , ASP A:2144 , HOH A:2558BINDING SITE FOR RESIDUE SO4 A 2405
6AC6SOFTWARELEU A:2251 , ASN A:2254 , GLY A:2289BINDING SITE FOR RESIDUE SO4 A 2406
7AC7SOFTWAREASN A:2278 , THR A:2279 , ASN A:2280 , MET A:2281BINDING SITE FOR RESIDUE SO4 A 2407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4RLY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4RLY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4RLY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4RLY)

(-) Exons   (0, 0)

(no "Exon" information available for 4RLY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhh....hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....hhhhh......hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhhh............hhhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4rly A 1113 STVTVPIAVGESDFENLNTESDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKRLPALHIAARKDDTKSAALLLQNDHNQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVVELLKVVT 2322
                                  1122      1132|     2038      2048      2058      2068      2078      2088      2098      2108      2118      2128      2138      2148      2158      2168      2178      2188|     2201      2211     |2224      2234      2244      2254      2264      2274      2284      2294      2304      2314        
                                            1132|                                                                                                                                                           2188|                     2217|                                                                                                     
                                             2029                                                                                                                                                            2192                      2221
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4RLY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4RLY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4RLY)

(-) Gene Ontology  (81, 86)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANK2_HUMAN | Q01484: 4d8o 4rlv

(-) Related Entries Specified in the PDB File

4rlv