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(-) Description

Title :  CRYSTAL STRUCTURE OF STACHYDRINE DEMETHYLASE IN COMPLEX WITH AZIDE
 
Authors :  R. Agarwal, B. Andi, A. Gizzi, J. B. Bonanno, S. C. Almo, A. M. Orville
Date :  11 Jul 14  (Deposition) - 15 Jul 15  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.27
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Composite Datasets, Photoelectron, Enzyme-Catalyzed Reactions, Azide, Synchrotron, Rieske Type Monoxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agarwal, B. Andi, A. Gizzi, J. B. Bonanno, S. C. Almo, A. M. Orville
Tracking Photoelectron Induced In-Crystallo Enzyme Catalysi
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MONOXYGENASE; DEMETHYLASE
    Chains: A
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SMA0751
    Organism Common: ENSIFER MELILOTI
    Organism Scientific: SINORHIZOBIUM MELILOTI 1021
    Organism Taxid: 266834
    Synonym: STACHYDRINE DEMETHYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1AZI1Ligand/IonAZIDE ION
2FE1Ligand/IonFE (III) ION
3FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4GOL1Ligand/IonGLYCEROL
5NCO1Ligand/IonCOBALT HEXAMMINE(III)
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
1AZI3Ligand/IonAZIDE ION
2FE-1Ligand/IonFE (III) ION
3FES3Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4GOL3Ligand/IonGLYCEROL
5NCO3Ligand/IonCOBALT HEXAMMINE(III)

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:86 , HIS A:88 , ARG A:89 , SER A:91 , CYS A:106 , HIS A:109 , GLN A:110 , TRP A:111BINDING SITE FOR RESIDUE FES A 501
2AC2SOFTWAREHIS A:204 , HIS A:209 , ASP A:360 , AZI A:505BINDING SITE FOR RESIDUE FE A 502
3AC3SOFTWAREARG A:15 , LEU A:16 , GLU A:22 , HOH A:612BINDING SITE FOR RESIDUE GOL A 503
4AC4SOFTWARELEU A:12 , ASP A:13 , ARG A:15 , GLU A:401 , HOH A:684 , HOH A:708BINDING SITE FOR RESIDUE NCO A 504
5AC5SOFTWAREASN A:199 , GLU A:201 , CYS A:202 , HIS A:209 , ASP A:360 , FE A:502BINDING SITE FOR RESIDUE AZI A 505

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:202 -A:205

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:289 -Pro A:290
2Tyr A:301 -Pro A:302

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QUQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QUQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4QUQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...hhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeeee.hhhh...eeeeeee..eeeeeee.....eeeee..............eee...ee......ee.....eee........hhhhh...eeeeee...eeeee.......hhhhhhhhhhhhhhhhhh.eeeeeeeeeee..hhhhhhhhhh...hhhhhhhhhhh.....hhhhhhhhhhhhhh......ee.....eeeeee..............................eeeeee...eeeee....eeeeeeeeee..eeeeeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4quq A  -6 NLYFQSMMTANPTSIHQRLDRRLSGFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFLPDHSLTFRVMPISPTETEVTTTWLVHKDAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPYSPGQESGVMQFVDWYAASLERALAP 406
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213   ||  235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405 
                                                                                                                                                                                                                                                         217|                                                                                                                                                                                
                                                                                                                                                                                                                                                          230
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QUQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QUQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QUQ)

(-) Gene Ontology  (11, 11)

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 Related Entries

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        Q92ZP9_RHIME | Q92ZP9: 3vca 3vcp 4qup 4qur 5hl4

(-) Related Entries Specified in the PDB File

3vca 3vcp 4qup 4qur