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(-) Description

Title :  CRYSTAL STRUCTURE OF REV AND REV-RESPONSE-ELEMENT RNA COMPLEX
 
Authors :  B. Jayaraman, D. C. Crosby, C. Homer, I. Ribeiro, D. Mavor, A. D. Frankel
Date :  21 May 14  (Deposition) - 24 Dec 14  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (3x)
Biol. Unit 2:  A,B,C  (6x)
Keywords :  Protein-Rna Complex, Helix-Loop-Helix, Hiv, Nuclear Export, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Jayaraman, D. C. Crosby, C. Homer, I. Ribeiro, D. Mavor, A. D. Franke
Rna-Directed Remodeling Of The Hiv-1 Protein Rev Orchestrates Assembly Of The Rev-Rev Response Element Complex.
Elife V. 4 04120 2014
PubMed-ID: 25486594  |  Reference-DOI: 10.7554/ELIFE.04120

(-) Compounds

Molecule 1 - REV-RESPONSE-ELEMENT RNA
    Chains: A
    Engineered: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Synthetic: YES
 
Molecule 2 - PROTEIN REV
    Chains: B, C
    Engineered: YES
    Expression System: ESCHERICHIA
    Expression System Taxid: 562
    Gene: REV
    Mutation: YES
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B
    Organism Taxid: 11707
    Strain: ISOLATE HXB3
    Synonym: ART/TRS,ANTI-REPRESSION TRANSACTIVATOR,REGULATOR OF EXPRESSION OF VIRAL PROTEINS

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (3x): ABC
Biological Unit 2 (6x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1PO43Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1PO46Ligand/IonPHOSPHATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:36 , ARG C:39binding site for residue PO4 A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PMI)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:40
                                                                       
                  4pmi A 36 GGGAGUAUAUGGGCGCACUUCGGUGACGGUACAGGCUCCU 82
                                    45        55  ||    72        82
                                                 58|                
                                                  66                


Chain B from PDB  Type:PROTEIN  Length:53
                                                                                    
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  4pmi B 11 DSLKAVRLIKFLYQSNPPPNPEGTRQARRNRRRRWRARQRQIHSISERIRSTY 63
                                    20        30        40        50        60   


Chain C from PDB  Type:PROTEIN  Length:52
                                                                                   
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                  4pmi C 13 LKAVRLIKFLYQSNPPPNPEGTRQARRNRRRRWRARQRQIHSISERIRSTYL 64
                                    22        32        42        52        62
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PMI)

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(no "CATH Domain" information available for 4PMI)

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(-) Gene Ontology  (10, 10)

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 Related Entries

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        REV_HV1H3 | P69718: 3lph 5dhx

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