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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF REV AND REV-RESPONSE-ELEMENT RNA COMPLE
Keywords PROTEIN-RNA COMPLEX, HELIX-LOOP-HELIX, HIV, NUCLEAR EXPORT, BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4PMI     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 40 849 0
2  Protein   PROTEIN REV  B 53 424 0
3  Protein   PROTEIN REV  C 52 438 0
4  Ligand   REV-RESPONSE-ELEMENT RNA  A 1 0 5
5 Water     1 0 1
total       147 1711 6

Proteins
Unit 2 ASP11 SER12 LEU13 LYS14 ALA15 VAL16 ARG17 LEU18 ILE19 LYS20 PHE21 LEU22 TYR23 GLN24 SER25 ASN26 PRO27 PRO28 PRO29 ASN30 PRO31 GLU32 GLY33 THR34 ARG35 GLN36 ALA37 ARG38 ARG39 ASN40 ARG41 ARG42 ARG43 ARG44 TRP45 ARG46 ALA47 ARG48 GLN49 ARG50 GLN51 ILE52 HIS53 SER54 ILE55 SER56 GLU57 ARG58 ILE59 ARG60 SER61 THR62 TYR63
Unit 3 LEU13 LYS14 ALA15 VAL16 ARG17 LEU18 ILE19 LYS20 PHE21 LEU22 TYR23 GLN24 SER25 ASN26 PRO27 PRO28 PRO29 ASN30 PRO31 GLU32 GLY33 THR34 ARG35 GLN36 ALA37 ARG38 ARG39 ASN40 ARG41 ARG42 ARG43 ARG44 TRP45 ARG46 ALA47 ARG48 GLN49 ARG50 GLN51 ILE52 HIS53 SER54 ILE55 SER56 GLU57 ARG58 ILE59 ARG60 SER61 THR62 TYR63 LEU64

Nucleic acids
Unit 1 G36 G37 G38 A39 G40 U41 A42 U43 A44 U45 G46 G47 G48 C49 G50 C51 A52 C53 U54 U55 C56 G57 G58 U66 G67 A68 C69 G70 G71 U72 A73 C74 A75 G76 G77 C78 U79 C80 C81 U82

Ligands
Unit 4 PO4101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany