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(-) Description

Title :  RNA 10MER DUPLEX WITH TWO 2'-5'-LINKAGES
 
Authors :  J. Sheng, L. Li, Engelhart A. E. , J. Gan, J. Wang, J. W. Szostak
Date :  18 Sep 13  (Deposition) - 12 Feb 14  (Release) - 19 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  2'-5'-Linkage, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Sheng, L. Li, A. E. Engelhart, J. Gan, J. Wang, J. W. Szostak
Structural Insights Into The Effects Of 2'-5' Linkages On The Rna Duplex.
Proc. Natl. Acad. Sci. Usa V. 111 3050 2014
PubMed-ID: 24516151  |  Reference-DOI: 10.1073/PNAS.1317799111

(-) Compounds

Molecule 1 - RNA 10MER DUPLEX WITH TWO 2'-5'-LINKAGES
    Chains: A, B, C, D, E, F
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED BY SOLID PHASE SYNTHESIS, AND PURIFIED BY HPLC
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SR7Ligand/IonSTRONTIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1SR-1Ligand/IonSTRONTIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SR-1Ligand/IonSTRONTIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1SR-1Ligand/IonSTRONTIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:206 , HOH A:209 , HOH A:219 , HOH A:220 , HOH A:223 , HOH A:233 , HOH B:202 , HOH B:205 , HOH B:232BINDING SITE FOR RESIDUE SR A 101
2AC2SOFTWAREHOH A:224 , HOH A:233 , HOH A:238 , G B:4 , HOH B:206 , HOH B:213 , HOH B:214 , HOH B:231BINDING SITE FOR RESIDUE SR B 101
3AC3SOFTWAREHOH C:206 , HOH C:211 , HOH C:224 , HOH C:226 , HOH C:227 , HOH D:205 , HOH D:230BINDING SITE FOR RESIDUE SR C 101
4AC4SOFTWAREHOH C:216 , HOH C:218 , HOH C:227 , HOH D:210 , HOH D:219 , HOH D:223 , HOH D:225BINDING SITE FOR RESIDUE SR D 101
5AC5SOFTWAREHOH E:202 , HOH E:205 , HOH E:210 , HOH E:224 , HOH E:225 , HOH F:210BINDING SITE FOR RESIDUE SR E 101
6AC6SOFTWAREHOH A:232 , HOH A:239 , C E:7 , G E:10 , HOH E:218 , HOH E:226BINDING SITE FOR RESIDUE SR E 102
7AC7SOFTWAREHOH F:206 , HOH F:209 , HOH F:215 , HOH F:218BINDING SITE FOR RESIDUE SR F 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MSB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MSB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MSB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MSB)

(-) Exons   (0, 0)

(no "Exon" information available for 4MSB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:10
                                         
                  4msb A  1 CCGGCGCCGG 10
                                    10


Chain B from PDB  Type:RNA  Length:10
                                         
                  4msb B  1 CCGGCGCCGG 10
                                    10


Chain C from PDB  Type:RNA  Length:10
                                         
                  4msb C  1 CCGGCGCCGG 10
                                    10


Chain D from PDB  Type:RNA  Length:10
                                         
                  4msb D  1 CCGGCGCCGG 10
                                    10


Chain E from PDB  Type:RNA  Length:10
                                         
                  4msb E  1 CCGGCGCCGG 10
                                    10


Chain F from PDB  Type:RNA  Length:10
                                         
                  4msb F  1 CCGGCGCCGG 10
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MSB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MSB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MSB)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4MSB)

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(-) Related Entries Specified in the PDB File

4ms9 4msr