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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GAS5 GRE MIMIC
 
Authors :  W. H. Hudson, E. A. Ortlund
Date :  21 Aug 13  (Deposition) - 12 Nov 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  C,D  (3x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B  (3x)
Biol. Unit 4:  A,B  (1x)
Biol. Unit 5:  E,F  (3x)
Biol. Unit 6:  E,F  (1x)
Biol. Unit 7:  G,H  (3x)
Biol. Unit 8:  G,H  (1x)
Keywords :  Rna Double Helix, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. H. Hudson, M. R. Pickard, I. M. De Vera, E. G. Kuiper, M. Mourtada-Maarabouni, G. L. Conn, D. J. Kojetin, G. T. Williams, E. A. Ortlund
Conserved Sequence-Specific Lincrna-Steroid Receptor Interactions Drive Transcriptional Repression And Direct Cell Fate.
Nat Commun V. 5 5395 2014
PubMed-ID: 25377354  |  Reference-DOI: 10.1038/NCOMMS6395

(-) Compounds

Molecule 1 - GAS5 GREM FWD
    Chains: C, A, E, G
    Engineered: YES
    Other Details: RNA SYNTHESIS
    Synthetic: YES
 
Molecule 2 - GAS5 GREM REV
    Chains: D, B, F, H
    Engineered: YES
    Other Details: RNA SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (3x):   CD    
Biological Unit 2 (1x):   CD    
Biological Unit 3 (3x): AB      
Biological Unit 4 (1x): AB      
Biological Unit 5 (3x):     EF  
Biological Unit 6 (1x):     EF  
Biological Unit 7 (3x):       GH
Biological Unit 8 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (1, 9)
No.NameCountTypeFull Name
1SO49Ligand/IonSULFATE ION
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 5 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 8 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG B:7 , C B:8 , HOH B:202BINDING SITE FOR RESIDUE SO4 B 102
2AC2SOFTWAREG F:7 , C F:8BINDING SITE FOR RESIDUE SO4 F 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MCF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MCF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MCF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MCF)

(-) Exons   (0, 0)

(no "Exon" information available for 4MCF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:8
                                       
                  4mcf A  3 GUGGUCUU 10


Chain B from PDB  Type:DNA/RNA  Length:11
                                          
                  4mcf B  1 AAGACUGCCUG 11
                                    10 


Chain C from PDB  Type:RNA  Length:9
                                        
                  4mcf C  2 AGUGGUCUU 10


Chain D from PDB  Type:RNA  Length:11
                                          
                  4mcf D  1 AAGACUGCCUG 11
                                    10 


Chain E from PDB  Type:RNA  Length:10
                                         
                  4mcf E  1 CAGUGGUCUU 10
                                    10


Chain F from PDB  Type:RNA  Length:10
                                         
                  4mcf F  1 AAGACUGCCU 10
                                    10


Chain G from PDB  Type:RNA  Length:10
                                         
                  4mcf G  1 CAGUGGUCUU 10
                                    10


Chain H from PDB  Type:RNA  Length:10
                                         
                  4mcf H  1 AAGACUGCCU 10
                                    10
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MCF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MCF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MCF)

(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 4MCF)

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  4mcf
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