Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE GAS5 GRE MIMIC
Keywords RNA DOUBLE HELIX, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4MCF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    C 9 191 0
2  RNA    D 11 232 0
3  RNA    A 8 169 0
4  DNA/RNA    B 11 213 0
5  RNA    E 10 208 0
6  RNA    F 10 209 0
7  RNA    G 10 208 0
8  RNA    H 10 209 0
9  Ligand   GAS5 GREM FWD  A 1 0 5
10  Ligand   GAS5 GREM REV  B 2 0 10
11  Ligand   GAS5 GREM REV  F 1 0 5
12 Water     26 0 26
total       109 1639 46

Nucleic acids
Unit 1 A2 G3 U4 G5 G6 U7 C8 U9 U10
Unit 2 A1 A2 G3 A4 C5 U6 G7 C8 C9 U10 G11
Unit 3 G3 U4 G5 G6 U7 C8 U9 U10
Unit 4 A1 A2 G3 A4 C5 U6 G7 C8 C9 U10 G11
Unit 5 C1 A2 G3 U4 G5 G6 U7 C8 U9 U10
Unit 6 A1 A2 G3 A4 C5 U6 G7 C8 C9 U10
Unit 7 C1 A2 G3 U4 G5 G6 U7 C8 U9 U10
Unit 8 A1 A2 G3 A4 C5 U6 G7 C8 C9 U10

Ligands
Unit 9 SO4101
Unit 10 SO4101 SO4102
Unit 11 SO4101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany