4L81 - JenaLib

Title :   STRUCTURE OF THE SAM-I/IV RIBOSWITCH (ENV87(DELTAU92, DELTAG93))

Authors :   J. J. Trausch, F. E. Reyes, A. L. Edwards, R. T. Batey

Date :   15 Jun 13 (Deposition) - 28 May 14 (Release) - 28 May 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.95

Chains :   Asym./Biol. Unit : A

Keywords :   Riboswitch, Gene Regulation, Sam Binding, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. J. Trausch, Z. Xu, A. L. Edwards, F. E. Reyes, P. E. Ross, R. Knight, R. T. Batey
Structural Basis For Diversity In The Sam Clan Of Riboswitches.
Proc. Natl. Acad. Sci. Usa V. 111 6624 2014
PubMed-ID: 24753586 | Reference-DOI: 10.1073/PNAS.1312918111

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 16)

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	A A:3 , U A:4 , C A:5 , G A:8 , A A:25 , C A:27 , U A:47 , G A:48 , C A:49 , U A:69 , C A:70	BINDING SITE FOR RESIDUE SAM A 101
02	AC2	SOFTWARE	G A:32 , A A:33 , G A:88 , A A:89 , A A:90 , G A:91	BINDING SITE FOR RESIDUE NCO A 102
03	AC3	SOFTWARE	A A:25 , A A:26 , A A:43 , A A:44 , G A:45 , G A:46	BINDING SITE FOR RESIDUE NCO A 103
04	AC4	SOFTWARE	G A:57 , G A:58 , G A:60	BINDING SITE FOR RESIDUE NCO A 104
05	AC5	SOFTWARE	U A:50 , C A:53	BINDING SITE FOR RESIDUE NCO A 105
06	AC6	SOFTWARE	G A:82 , G A:83	BINDING SITE FOR RESIDUE NCO A 106
07	AC7	SOFTWARE	C A:28 , U A:29 , G A:30 , G A:31 , C A:41 , C A:42 , MG A:112	BINDING SITE FOR RESIDUE NCO A 107
08	AC8	SOFTWARE	C A:21 , G A:22 , G A:23 , C A:49 , U A:50	BINDING SITE FOR RESIDUE NCO A 108
09	AC9	SOFTWARE	C A:76 , G A:77 , G A:79	BINDING SITE FOR RESIDUE NCO A 109
10	BC1	SOFTWARE	A A:26 , C A:42 , A A:43	BINDING SITE FOR RESIDUE NCO A 110
11	BC2	SOFTWARE	G A:91	BINDING SITE FOR RESIDUE MG A 111
12	BC3	SOFTWARE	G A:30 , G A:31 , NCO A:107	BINDING SITE FOR RESIDUE MG A 112
13	BC4	SOFTWARE	G A:30 , A A:44 , C A:87	BINDING SITE FOR RESIDUE MG A 113
14	BC5	SOFTWARE	G A:1	BINDING SITE FOR RESIDUE MG A 114
15	BC6	SOFTWARE	G A:58 , A A:59 , G A:60	BINDING SITE FOR RESIDUE MG A 115
16	BC7	SOFTWARE	G A:72 , G A:73	BINDING SITE FOR RESIDUE MG A 116

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:96
                                                                                                                               
                  4l81 A  1 GGAUCACGAGGGGGAGACCCCGGCAACCUGGGACGGACACCCAAGGUGCUCACACCGGAGACGGUGGAUCCGGCCCGAGAGGGCAACGAAGUCCGU 96
                                    10        20        30        40        50        60        70        80        90

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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