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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE SAM-I/IV RIBOSWITCH (ENV87(DELTAU92, DELTAG
Keywords RIBOSWITCH, GENE REGULATION, SAM BINDING, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4L81     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 96 2075 0
2  Ligand   SAM-I/IV VARIANT RIBOSWITCH APTAMER DOMAIN  A 16 0 96
total       112 2075 96

Nucleic acids
Unit 1 G1 G2 A3 U4 C5 A6 C7 G8 A9 G10 G11 G12 G13 G14 A15 G16 A17 C18 C19 C20 C21 G22 G23 C24 A25 A26 C27 C28 U29 G30 G31 G32 A33 C34 G35 G36 A37 C38 A39 C40 C41 C42 A43 A44 G45 G46 U47 G48 C49 U50 C51 A52 C53 A54 C55 C56 G57 G58 A59 G60 A61 C62 G63 G64 U65 G66 G67 A68 U69 C70 C71 G72 G73 C74 C75 C76 G77 A78 G79 A80 G81 G82 G83 C84 A85 A86 C87 G88 A89 A90 G91 U92 C93 C94 G95 U96

Ligands
Unit 2 SAM101 NCO102 NCO103 NCO104 NCO105 NCO106 NCO107 NCO108 NCO109 NCO110 MG111 MG112 MG113 MG114 MG115 MG116

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany