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(-) Description

Title :  CRYSTAL STRUCTURE OF RNA 17-MER UUCGGUUUUGAUCCGGA DUPLEX
 
Authors :  P. C. Smith, S. Shuman
Date :  29 May 13  (Deposition) - 12 Jun 13  (Release) - 12 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rna Duplex, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. C. Smith, S. Shuman
Crystal Structure Of Rna 17-Mer Uucgguuuugauccgga Duplex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RNA 17-MER
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1K7Ligand/IonPOTASSIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREU A:7 , U A:8 , G B:10 , A B:11 , HOH B:236 , HOH B:238BINDING SITE FOR RESIDUE K A 101
2AC2SOFTWAREU A:1 , U A:2 , HOH A:222 , G B:15 , G B:16 , A B:17 , HOH B:241BINDING SITE FOR RESIDUE K A 102
3AC3SOFTWAREU A:9 , G A:10 , HOH A:205 , HOH A:226 , U B:8BINDING SITE FOR RESIDUE K A 103
4AC4SOFTWAREG A:15 , G A:16 , HOH A:227 , HOH A:230 , U B:1 , U B:2BINDING SITE FOR RESIDUE K A 104
5AC5SOFTWAREG A:5 , U A:6 , HOH A:207 , HOH A:208 , HOH A:217 , U B:12 , HOH B:223BINDING SITE FOR RESIDUE K A 105
6AC6SOFTWAREA A:11 , U A:12 , HOH A:225 , HOH A:228 , G B:5 , U B:6 , HOH B:237BINDING SITE FOR RESIDUE K B 101
7AC7SOFTWAREHOH A:228 , C B:3 , G B:4 , G B:5 , HOH B:216 , HOH B:244BINDING SITE FOR RESIDUE K B 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KYY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KYY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KYY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KYY)

(-) Exons   (0, 0)

(no "Exon" information available for 4KYY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:17
                                                
                  4kyy A  1 UUCGGUUUUGAUCCGGA 17
                                    10       


Chain B from PDB  Type:RNA  Length:17
                                                
                  4kyy B  1 UUCGGUUUUGAUCCGGA 17
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KYY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KYY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KYY)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4KYY)

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 Related Entries

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