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(-) Description

Title :  STRUCTURE OF THE H258Y MUTANT OF THE PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C FROM STAPHYLOCOCCUS AUREUS
 
Authors :  R. I. Goldstein, J. Cheng, B. Stec, A. Gershenson, M. F. Roberts
Date :  05 Dec 12  (Deposition) - 10 Apr 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim Barrel, Phospholipase, Lyase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Cheng, R. Goldstein, A. Gershenson, B. Stec, M. F. Roberts
The Cation-Pi Box Is A Specific Phosphatidylcholine Membran Targeting Motif.
J. Biol. Chem. V. 288 14863 2013
PubMed-ID: 23576432  |  Reference-DOI: 10.1074/JBC.M113.466532

(-) Compounds

Molecule 1 - 1-PHOSPHATIDYLINOSITOL PHOSPHODIESTERASE
    Chains: A
    EC Number: 4.6.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PLC, NWMN_0041
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS
    Organism Taxid: 426430
    Strain: NEWMAN
    Synonym: PHOSPHATIDYLINOSITOL DIACYLGLYCEROL-LYASE, PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C, PI-PLC

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1INS2Ligand/Ion1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
2PGE2Ligand/IonTRIETHYLENE GLYCOL
3SO41Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:37 , LYS A:38 , ASP A:39 , LYS A:42 , HIS A:86BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREHIS A:30 , ARG A:67 , LYS A:113 , ARG A:166 , ASP A:206 , TYR A:208 , HOH A:603 , HOH A:604 , HOH A:655 , HOH A:722BINDING SITE FOR RESIDUE INS A 502
3AC3SOFTWAREASP A:50 , LYS A:51 , GLY A:284 , TYR A:285 , THR A:286 , HOH A:697 , HOH A:756BINDING SITE FOR RESIDUE INS A 503
4AC4SOFTWARETYR A:253 , SER A:257 , TYR A:258 , TRP A:287 , TYR A:290BINDING SITE FOR RESIDUE PGE A 504
5AC5SOFTWARELYS A:47 , ASP A:50 , TYR A:282 , TYR A:285BINDING SITE FOR RESIDUE PGE A 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I9T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I9T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I9T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I9T)

(-) Exons   (0, 0)

(no "Exon" information available for 4I9T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh..hhhhhh....hhhhh.eeee.hhhhhhh.hhhhhhhhh....hhhhhhhh...eeeeeeeeee..eeeeee..eeeeeehhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhh..hhhhh...........hhhhhh..eeeeee......................eeeeeee....eeeeeee....hhhhhhhhhhhhhhhhhhh....eeeeee...........hhhhhhhhhhhhhhhhhhhhh.....eeee...........hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i9t A   1 SDSLSKSPENWMSKLDDGKHLTEINIPGSHDSGSFTLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASYINPEIAKTIKANGKARTGWLIVDYAGYTWPGYDDIVSEIIDSNKLEH 305
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I9T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I9T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I9T)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLC_STAAE | P45723: 3v16 3v18 3v1h 4f2b 4f2t 4f2u 4i8y 4i90 4i9j 4i9m 4rv3 4s3g

(-) Related Entries Specified in the PDB File

3v1h H258Y MUTANT OF THE S. AUREUS PI-PLC CRYSTALLIZED IN ACIDIC CONDITIONS
4i9j
4i9m