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(-) Description

Title :  CRYSTAL STRUCTURE OF 31KD HEAT SHOCK PROTEIN, VCHSP31 FROM VIBRIO CHOLERAE
 
Authors :  S. Das, U. Sen
Date :  22 Nov 12  (Deposition) - 27 Nov 13  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Hsp-31, Chaperone-Protease, Alpha-Beta Domains, Heat Shock Protein, Small Peptides And Denatured Proteins, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Das, U. Sen
Temperature Dependent Structural Flexibility And Functional Activation Of 31Kd Heat Shock Protein, Vchsp31 From Vibrio Cholerae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INTRACELLULAR PROTEASE/AMIDASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PET(28A+)
    Fragment: UNP RESIDUES 6-284
    Gene: A5F0Q0, VC0395_0351, VC395_A0912
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 345073
    Strain: ATCC 39541 / OGAWA 395 / O395

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
2MPD5Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:30 , PHE A:211 , ILE A:249 , PRO A:265 , LEU A:266BINDING SITE FOR RESIDUE MPD A 301
02AC2SOFTWARETYR A:224 , PRO A:265 , HOH A:409 , HOH A:583BINDING SITE FOR RESIDUE CA A 302
03AC3SOFTWAREPRO B:265 , HOH B:421 , HOH B:445 , HOH B:465BINDING SITE FOR RESIDUE MPD B 301
04AC4SOFTWARETYR B:224 , PRO B:265 , HOH B:409BINDING SITE FOR RESIDUE CA B 302
05AC5SOFTWARETYR C:224 , PRO C:265 , HOH C:418BINDING SITE FOR RESIDUE CA C 301
06AC6SOFTWAREPHE D:30 , PHE D:211 , ILE D:249 , PRO D:265 , LEU D:266 , HOH D:629BINDING SITE FOR RESIDUE MPD D 301
07AC7SOFTWARETYR D:224 , PRO D:265 , HOH D:431 , HOH D:489BINDING SITE FOR RESIDUE CA D 302
08AC8SOFTWAREPHE E:30 , PHE E:211 , ILE E:249 , LEU E:266BINDING SITE FOR RESIDUE MPD E 301
09AC9SOFTWARETYR E:224 , HOH E:410BINDING SITE FOR RESIDUE CA E 302
10BC1SOFTWAREPHE F:30 , PHE F:211 , ILE F:249 , PRO F:265 , LEU F:266BINDING SITE FOR RESIDUE MPD F 301
11BC2SOFTWARETYR F:224 , PRO F:265 , HOH F:418 , HOH F:594BINDING SITE FOR RESIDUE CA F 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I2N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I2N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I2N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I2N)

(-) Exons   (0, 0)

(no "Exon" information available for 4I2N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh.hhhhh..ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i2n A   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain B from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i2n B   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain C from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i2n C   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain D from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i2n D   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain E from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i2n E   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain F from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhh........eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i2n F   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I2N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I2N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I2N)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

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        A0A0H3AFW5_V | A0A0H3AFW5: 4i46 4i4n 5jzm 5jzo 5k4a

(-) Related Entries Specified in the PDB File

1n57 4i46 4i4n