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(-) Description

Title :  CRYSTAL STRUCTURE OF 31KD HEAT SHOCK PROTEIN, VCHSP31 FROM VIBRIO CHOLERAE
 
Authors :  U. Sen, S. Das
Date :  27 Nov 12  (Deposition) - 27 Nov 13  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  E  (1x)
Biol. Unit 5:  F  (1x)
Keywords :  Alpha-Beta Domains, Chaperone-Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Das, U. Sen
Temperature Dependent Structural Flexibility And Functional Activation Of 31Kd Heat Shock Protein, Vchsp31 From Vibrio Cholerae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INTRACELLULAR PROTEASE/AMIDASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PET28A+
    Fragment: HEAT SHOCK PROTEIN 31
    Gene: A5F0Q0, VC0395_0351, VC395_A0912
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 345073
    Strain: ATCC 39541 / OGAWA 395 / O395

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF
Biological Unit 4 (1x):     E 
Biological Unit 5 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1MPD6Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:211 , ILE A:249 , PRO A:265BINDING SITE FOR RESIDUE MPD A 301
2AC2SOFTWAREPHE B:30 , ILE B:249 , PRO B:265 , LEU B:266BINDING SITE FOR RESIDUE MPD B 5001
3AC3SOFTWARETHR B:31 , ALA B:32 , HOH B:5190 , HOH B:5198 , HOH B:5215BINDING SITE FOR RESIDUE MPD B 5002
4AC4SOFTWAREPHE D:30 , PHE D:211 , ILE D:249 , PRO D:265 , LEU D:266BINDING SITE FOR RESIDUE MPD D 301
5AC5SOFTWAREPHE E:30 , PHE E:211 , ILE E:249 , PRO E:265 , LEU E:266BINDING SITE FOR RESIDUE MPD E 301
6AC6SOFTWAREPHE F:30 , PHE F:211 , ILE F:249 , PRO F:265 , LEU F:266BINDING SITE FOR RESIDUE MPD F 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I46)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4I46)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I46)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I46)

(-) Exons   (0, 0)

(no "Exon" information available for 4I46)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhhh.eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhhh.....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh.hhhhh..ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i46 A   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain B from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i46 B   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain C from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhh........eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i46 C   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain D from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhhh.eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhh...ee........eeee..eeee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i46 D   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain E from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhhhh......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhh........ee...hhhhhhhhhhhh........hhhhhhhhh..ee........eeee..eeee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i46 E   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 


Chain F from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee......eee.hhhhhhhhh....................eeeee.....eee.....eee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhhhhhhhh.eehhhhhh........eeeeee..hhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhh........ee...hhhhhh.hhhhh........hhhhhhhhh..ee........eeee..eeee.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i46 F   5 MNDKHPTPDPAEDNAFFPSAYSLSQFTASKSDLSGAHYPTPYQGGRWKILVVGADERYLMMDNGTFFSTGNHPVETLLPMYHLDKAGFSFDIATLSGNPVKFEWWAMPREDQEVNGLYSKYQSSFRQPLKLSDVIETALGEDSDYIGVFIPGGHGALMGLPDSQEVKAVLQWAMKQNKFIISLCHGPAAFLAVGDDPLFAGYKIVAFPDEMDAQTPSIGYMPGHLTWKFGEQLQAIGFELLNTGISGQVFQDRKMLTGDSPLAGNALGQLAAKALLAEVEQ 285
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4I46)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4I46)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4I46)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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  4i46
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3AFW5_V | A0A0H3AFW5: 4i2n 4i4n 5jzm 5jzo 5k4a

(-) Related Entries Specified in the PDB File

4i2n 4i4n