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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE CHROMATE REDUCTASE FROM GLUCONACETOBACTER HANSENII, GH-CHRR, CONTAINING A Y129N SUBSTITUTION.
 
Authors :  Y. Zhang, H. Robinson, G. W. Buchko
Date :  29 Oct 12  (Deposition) - 26 Dec 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 2:  A (1x),E (1x)
Biol. Unit 3:  B (1x),F (1x)
Biol. Unit 4:  C,D  (1x)
Biol. Unit 5:  G,H  (1x)
Keywords :  Triple-Layered, A/B/A Structure, Nad(P)H-Dependent Fmn Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. W. Buchko, Y. Zhang, H. Robinson
Mechanistic Insights Of Chromate And Uranyl Reduction By Th Nadph-Dependent Fmn Reductase, Chrr, From Gluconacetobacter Hansenii
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CHROMATE REDUCTASE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PJEXPRESS411
    Gene: GXY_09224
    Organism Scientific: GLUCONACETOBACTER HANSENII
    Organism Taxid: 714995
    Strain: ATCC 23769

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)
Biological Unit 2 (1x): A (1x)   E (1x)   
Biological Unit 3 (1x):  B (1x)   F (1x)  
Biological Unit 4 (1x):   CD    
Biological Unit 5 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1FMN3Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1FMN-1Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1FMN-1Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:15 , ARG B:17 , SER B:20 , PHE B:21 , ASN B:22 , PRO B:82 , GLU B:83 , TYR B:84 , ASN B:85 , TYR B:86 , SER B:118 , PRO B:119 , HOH B:310 , HOH B:312 , HOH B:347 , TYR F:51 , ASP F:97 , SER F:100 , ARG F:101 , HOH F:271BINDING SITE FOR RESIDUE FMN B 201
2AC2SOFTWARESER C:15 , ARG C:17 , SER C:20 , PHE C:21 , ASN C:22 , PRO C:82 , GLU C:83 , TYR C:84 , ASN C:85 , TYR C:86 , SER C:118 , PRO C:119 , HOH C:309 , HOH C:312 , HOH C:357 , TYR D:51 , ASP D:97 , SER D:100 , ARG D:101 , HOH D:226BINDING SITE FOR RESIDUE FMN C 201
3AC3SOFTWARETYR G:51 , ASP G:97 , SER G:100 , ARG G:101 , SER H:15 , ARG H:17 , SER H:20 , PHE H:21 , ASN H:22 , PRO H:82 , GLU H:83 , TYR H:84 , ASN H:85 , TYR H:86 , SER H:118 , HOH H:302 , HOH H:307 , HOH H:343BINDING SITE FOR RESIDUE FMN H 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HS4)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ser A:103 -Pro A:104
2Arg A:145 -Pro A:146
3Ser B:103 -Pro B:104
4Arg B:145 -Pro B:146
5Ser C:103 -Pro C:104
6Arg C:145 -Pro C:146
7Ser D:103 -Pro D:104
8Arg D:145 -Pro D:146
9Ser E:103 -Pro E:104
10Arg E:145 -Pro E:146
11Ser F:103 -Pro F:104
12Arg F:145 -Pro F:146
13Ser G:103 -Pro G:104
14Arg G:145 -Pro G:146
15Ser H:103 -Pro H:104
16Arg H:145 -Pro H:146

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HS4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HS4)

(-) Exons   (0, 0)

(no "Exon" information available for 4HS4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhhh..........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hs4 A   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    


Chain B from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhhhh.........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hs4 B   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    


Chain C from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhhh.........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hs4 C   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    


Chain D from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhhh.........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hs4 D   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    


Chain E from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh..........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hs4 E   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    


Chain F from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh..........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hs4 F   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    


Chain G from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhhh.eeeeee.......hhhhhhhhhhhhh.........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hs4 G   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    


Chain H from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh..........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hs4 H   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HS4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HS4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HS4)

(-) Gene Ontology  (3, 3)

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 Related Entries

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        D5QFC5_KOMHA | D5QFC5: 3s2y 4h6p

(-) Related Entries Specified in the PDB File

3s2y 4h6p