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(-) Description

Title :  CRYSTAL STRUCTURE OF A CHROMATE/URANIUM REDUCTASE FROM GLUCONACETOBACTER HANSENII
 
Authors :  H. Jin, Y. Zhang, G. W. Buchko, P. Li, T. C. Squier, H. Robinson, S. M. Varn P. E. Long
Date :  17 May 11  (Deposition) - 30 May 12  (Release) - 22 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A (2x),D (2x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  B,C  (2x)
Biol. Unit 4:  B,C  (1x)
Biol. Unit 5:  D  (2x)
Keywords :  Chromate Reductase, Uranium Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Jin, Y. Zhang, G. W. Buchko, S. M. Varnum, H. Robinson, T. C. Squier, P. E. Long
Structure Determination And Functional Analysis Of A Chromate Reductase From Gluconacetobacter Hansenii.
Plos One V. 7 42432 2012
PubMed-ID: 22879982  |  Reference-DOI: 10.1371/JOURNAL.PONE.0042432

(-) Compounds

Molecule 1 - CHROMATE REDUCTASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: GXY_09224
    Organism Scientific: GLUCONACETOBACTER HANSENII
    Organism Taxid: 714995
    Strain: ATCC 23769

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): A (2x)  D (2x)
Biological Unit 2 (2x): A   
Biological Unit 3 (2x):  BC 
Biological Unit 4 (1x):  BC 
Biological Unit 5 (2x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
3PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
3PG42Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 4 (2, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3PG4-1Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:15 , ARG A:17 , SER A:20 , PHE A:21 , ASN A:22 , TYR A:51 , PRO A:82 , GLU A:83 , TYR A:84 , ASN A:85 , TYR A:86 , ASP A:97 , SER A:100 , ARG A:101 , SER A:118 , PRO A:119 , HOH A:205 , HOH A:208 , HOH A:210 , HOH A:236 , HOH A:251BINDING SITE FOR RESIDUE FMN A 200
2AC2SOFTWARESER B:15 , ARG B:17 , SER B:20 , PHE B:21 , ASN B:22 , PRO B:82 , GLU B:83 , TYR B:84 , ASN B:85 , TYR B:86 , SER B:118 , PRO B:119 , HOH B:232 , HOH B:271 , TYR C:51 , GLN C:53 , ASP C:97 , SER C:100 , ARG C:101BINDING SITE FOR RESIDUE FMN B 201
3AC3SOFTWARETHR B:47 , PHE B:48 , HOH B:226 , GLY C:46 , THR C:47 , PHE C:48 , HIS C:50BINDING SITE FOR RESIDUE PG4 B 202
4AC4SOFTWARETYR B:51 , ASP B:97 , SER B:100 , ARG B:101 , HOH B:212 , SER C:15 , ARG C:17 , SER C:20 , PHE C:21 , ASN C:22 , PRO C:82 , GLU C:83 , TYR C:84 , ASN C:85 , TYR C:86 , SER C:118 , PRO C:119 , HOH C:213 , HOH C:229 , HOH C:240BINDING SITE FOR RESIDUE FMN C 200
5AC5SOFTWARESER D:15 , ARG D:17 , SER D:20 , PHE D:21 , ASN D:22 , TYR D:51 , PRO D:82 , GLU D:83 , TYR D:84 , ASN D:85 , TYR D:86 , ASP D:97 , SER D:100 , ARG D:101 , SER D:118 , PRO D:119 , HOH D:203 , HOH D:212 , HOH D:244BINDING SITE FOR RESIDUE FMN D 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S2Y)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ser A:103 -Pro A:104
2Arg A:145 -Pro A:146
3Ser B:103 -Pro B:104
4Arg B:145 -Pro B:146
5Ser C:103 -Pro C:104
6Arg C:145 -Pro C:146
7Arg C:185 -Thr C:186
8Arg D:145 -Pro D:146

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S2Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S2Y)

(-) Exons   (0, 0)

(no "Exon" information available for 3S2Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with D5QFC5_KOMHA | D5QFC5 from UniProtKB/TrEMBL  Length:193

    Alignment length:184
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    
         D5QFC5_KOMHA     5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhh..eeeee........hhhhhhhhhhhh..........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s2y A   5 SPLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTLS 188
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    


Chain B from PDB  Type:PROTEIN  Length:182
 aligned with D5QFC5_KOMHA | D5QFC5 from UniProtKB/TrEMBL  Length:193

    Alignment length:182
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185  
         D5QFC5_KOMHA     6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTL 187
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhh.........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s2y B   6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTL 187
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185  


Chain C from PDB  Type:PROTEIN  Length:181
 aligned with D5QFC5_KOMHA | D5QFC5 from UniProtKB/TrEMBL  Length:193

    Alignment length:181
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185 
         D5QFC5_KOMHA     6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALART 186
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhhhh.hhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhh........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s2y C   6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALART 186
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185 


Chain D from PDB  Type:PROTEIN  Length:182
 aligned with D5QFC5_KOMHA | D5QFC5 from UniProtKB/TrEMBL  Length:193

    Alignment length:182
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185  
         D5QFC5_KOMHA     6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTL 187
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......hhhhhhhhhhhhhh...eeeee..hhhhh...hhhhhh...hhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhh.........eeeeeee......hhhhhhhhhhhhhhh..ee.....eee.hhhhh.........hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s2y D   6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNRPEAMIGQVTGKVDAQTLELSDVATREFLARQLDALAALARTL 187
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3S2Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S2Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3S2Y)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (D5QFC5_KOMHA | D5QFC5)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

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        D5QFC5_KOMHA | D5QFC5: 4h6p 4hs4

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