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Asym./Biol. Unit (Jmol Viewer)

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Title :   HIGH ENERGY REMOTE SAD STRUCTURE SOLUTION OF PROTEINASE K FROM THE 37.8 KEV TELLURIUM K EDGE

Authors :   J. Jakoncic

Date :   20 Jun 12 (Deposition) - 22 Aug 12 (Release) - 22 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.05

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. Honkimaki, V. Stojanoff, M. Dimichiel, J. Jakoncic
Macromolecular Crystallography At High(Er) Energy
To Be Published
PubMed: search

Molecule 1 - PROTEINASE K
	Chains	:	A
	EC Number	:	3.4.21.64
	Fragment	:	UNP RESIDUES 106-384
	Organism Common	:	TRITIRACHIUM ALBUM
	Organism Scientific	:	ENGYODONTIUM ALBUM
	Organism Taxid	:	37998
	Synonym	:	ENDOPEPTIDASE K, TRITIRACHIUM ALKALINE PROTEINASE

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 11)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	O	5	Ligand/Ion	OXYGEN ATOM
4	SO4	2	Ligand/Ion	SULFATE ION
5	TE	1	Ligand/Ion	TELLURIUM

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PRO A:175 , VAL A:177 , ASP A:200 , HOH A:411 , HOH A:431 , HOH A:450 , HOH A:479	BINDING SITE FOR RESIDUE CA A 301
02	AC2	SOFTWARE	ASN A:161 , SER A:224 , O A:303 , O A:304 , O A:305 , O A:306 , O A:307	BINDING SITE FOR RESIDUE TE A 302
03	AC3	SOFTWARE	ALA A:158 , THR A:223 , SER A:224 , TE A:302 , O A:304 , O A:306 , O A:307 , HOH A:808	BINDING SITE FOR RESIDUE O A 303
04	AC4	SOFTWARE	SER A:132 , SER A:224 , TE A:302 , O A:303 , O A:305 , O A:307 , HOH A:625	BINDING SITE FOR RESIDUE O A 304
05	AC5	SOFTWARE	HIS A:69 , SER A:224 , TE A:302 , O A:304 , O A:306 , O A:307 , HOH A:594 , HOH A:805	BINDING SITE FOR RESIDUE O A 305
06	AC6	SOFTWARE	ASN A:161 , GLY A:222 , THR A:223 , SER A:224 , TE A:302 , O A:303 , O A:305 , O A:307	BINDING SITE FOR RESIDUE O A 306
07	AC7	SOFTWARE	ASN A:161 , TE A:302 , O A:303 , O A:304 , O A:305 , O A:306	BINDING SITE FOR RESIDUE O A 307
08	AC8	SOFTWARE	ARG A:189 , LYS A:242 , THR A:243 , SER A:247 , TYR A:251 , HOH A:441 , HOH A:511	BINDING SITE FOR RESIDUE EDO A 308
09	AC9	SOFTWARE	ASP A:254 , THR A:255 , ALA A:256 , LYS A:258 , TYR A:274 , HOH A:530 , HOH A:793	BINDING SITE FOR RESIDUE EDO A 309
10	BC1	SOFTWARE	SER A:138 , SER A:139 , SER A:140 , HOH A:468 , HOH A:788 , HOH A:790	BINDING SITE FOR RESIDUE SO4 A 310
11	BC2	SOFTWARE	SER A:62 , SER A:63 , ARG A:64 , HOH A:677 , HOH A:783 , HOH A:789	BINDING SITE FOR RESIDUE SO4 A 311

Asymmetric/Biological Unit

No.	Residues
1	A:34	-	A:123
2	A:178	-	A:249

Asymmetric/Biological Unit

No.	Residues
1	Ser A:170	-	Pro A:171

(no "SAP(SNP)/Variant" information available for 4FON)

(no "PROSITE Motif" information available for 4FON)

(no "Exon" information available for 4FON)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4fona_ A: Proteinase K                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee...hhhhhhhh........ee........eeeeeee......hhhhh..eeeeee.........hhhhhhhhhhhh.........eeeeee........hhhhhhhhhhhhhhhhhhh....eeeeee...ee.hhhhhhhhhhhhhh.eeeeee......hhh.ee.......eeeeee.................eeee...eeeee...eeeee.hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhee............ee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fon A   1 AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA 279
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Subtilisin-like (227)

Superfamily: Subtilisin-like (227)

Family: Subtilases (190)

Protein domain: Proteinase K (21)

Fungus (Tritirachium album), strain limber [TaxId: 37998] (21)

d4fona_

(no "CATH Domain" information available for 4FON)

(no "Pfam Domain" information available for 4FON)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		O	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		TE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
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		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
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		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ser A:170 - Pro A:171	[ RasMol ]

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	4fon
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2v8b	SAD STRUCTURE FROM MEDIUM ENERGY AT THE (HIGH ENERGY) REMOTE ENERGY DATA, ABOVE THE THE SE K EDGE
3l1k	SAD STRUCTURE FROM LOW ENERGY AT THE (HIGH ENERGY) REMOTE ENERGY DATA, ABOVE THE TE L EDGES

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 11)

Sites (11, 11)

SS Bonds (2, 2)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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