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(-) Description

Title :  CRYSTAL STRUCTURE OF GCC(LCG)CCGC DUPLEX CONTAINING LNA RESIDUE
 
Authors :  A. Kiliszek, R. Kierzek, W. J. Krzyzosiak, R. Rypniewski
Date :  14 Mar 12  (Deposition) - 12 Dec 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  C,D,E
Biol. Unit 1:  C,D  (1x)
Biol. Unit 2:  E  (2x)
Keywords :  Ccg Repeats, 5' Slippery Duplexes, X-Linked Mental Retardation, Huntington'S Disease, Myotonic Dystrophy Type 1, Lna Guanosine, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kiliszek, R. Kierzek, W. J. Krzyzosiak, W. Rypniewski
Crystallographic Characterization Of Ccg Repeats.
Nucleic Acids Res. V. 40 8155 2012
PubMed-ID: 22718980  |  Reference-DOI: 10.1093/NAR/GKS557

(-) Compounds

Molecule 1 - RNA DUPLEX CONTAINING CCG REPEATS
    Chains: C, E, D
    Engineered: YES
    Other Details: SIMILAR SEQUENCES OCCUR IN MRNA IN HUMANS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : CDE
Biological Unit 1 (1x): CD 
Biological Unit 2 (2x):   E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1LCG3Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGENPHOSPHATE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1LCG2Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGENPHOSPHATE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1LCG2Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGENPHOSPHATE
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREC C:2 , C C:3 , HOH C:202BINDING SITE FOR RESIDUE SO4 C 101
2AC2SOFTWAREG C:7 , C C:8 , LCG D:4 , C D:5BINDING SITE FOR RESIDUE SO4 D 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E58)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E58)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E58)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E58)

(-) Exons   (0, 0)

(no "Exon" information available for 4E58)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain C from PDB  Type:RNA  Length:8
                                      
                   4e58 C 1 GCCgCCGC 8
                               |    
                               |    
                               4-LCG


Chain D from PDB  Type:RNA  Length:8
                                      
                   4e58 D 1 GCCgCCGC 8
                               |    
                               4-LCG


Chain E from PDB  Type:DNA/RNA  Length:8
                                      
                   4e58 E 1 GCCgCCGC 8
                               |    
                               4-LCG
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E58)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E58)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E58)

(-) Gene Ontology  (0, 0)

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  4e58
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 Related Entries

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(-) Related Entries Specified in the PDB File

4e59