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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BACTERIAL NSS MEMBER MHST IN AN OCCLUDED INWARD-FACING STATE (LIPIDIC CUBIC PHASE FORM)
 
Authors :  L. Malinauskaite, M. Quick, L. Reinhard, J. A. Lyons, H. Yano, J. A. Javi P. Nissen
Date :  02 Jul 14  (Deposition) - 24 Sep 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Transport Protein, Neurotransmitter, Neurotransmitter Sodium Symporter Family, Leut Fold, Amino Acid Transporter, Secondary Transporter, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Malinauskaite, M. Quick, L. Reinhard, J. A. Lyons, H. Yano, J. A. Javitch, P. Nissen
A Mechanism For Intracellular Release Of Na+ By Neurotransmitter/Sodium Symporters
Nat. Struct. Mol. Biol. V. 21 1006 2014
PubMed-ID: 25282149  |  Reference-DOI: 10.1038/NSMB.2894

(-) Compounds

Molecule 1 - TRANSPORTER
    Atcc: BAA-125
    Chains: A
    Engineered: YES
    Expression System: LACTOCOCCUS LACTIS SUBSP. CREMORIS NZ9000
    Expression System Plasmid: PNZ8048
    Expression System Taxid: 746361
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 272558
    Strain: C-125
    Synonym: MULTI-HYDROPHOBIC AMINO ACID TRANSPORTER

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
178M2Ligand/Ion
278N1Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE
3NA2Ligand/IonSODIUM ION
4TRP1Mod. Amino AcidTRYPTOPHAN

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:25 , ALA A:26 , GLY A:28 , LEU A:29 , GLY A:30 , ASN A:31 , TYR A:108 , PHE A:230 , THR A:231 , SER A:233 , MET A:236 , SER A:324 , SER A:327 , LEU A:328 , NA A:702BINDING SITE FOR RESIDUE TRP A 601
2AC2SOFTWAREGLY A:24 , VAL A:27 , ALA A:320 , SER A:323 , SER A:324 , HOH A:2001BINDING SITE FOR RESIDUE NA A 701
3AC3SOFTWAREALA A:26 , ASN A:31 , THR A:231 , ASP A:263 , TRP A:601BINDING SITE FOR RESIDUE NA A 702
4AC4SOFTWAREPRO A:146 , THR A:196 , ILE A:360 , 78N A:1451BINDING SITE FOR RESIDUE 78M A1450
5AC5SOFTWARETHR A:124 , THR A:147 , LEU A:148 , PHE A:151 , 78M A:1450 , HOH A:2013 , HOH A:2022BINDING SITE FOR RESIDUE 78N A1451
6AC6SOFTWARETRP A:128 , ILE A:303 , ARG A:304 , LEU A:305 , VAL A:309BINDING SITE FOR RESIDUE 78M A1452

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4US4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4US4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4US4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4US4)

(-) Exons   (0, 0)

(no "Exon" information available for 4US4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:434
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4us4 A  17 GFILAAMGSAVGLGNIWRFSYVTGENGGAAFLLVYLGFIALIGIPIVLAEFTIGRRAQSDAVGSFEKLAPGKPWKVAGLMGVAAGFLILSFYGVIAGWILFYLFNYITGQLWSAPAEGFGGFFEGFIANPTLPLFWQALFMIATIWIVAIGVKKGIERSNKILMPLLGVLLIALAIYSLTLGGAKEGLAFLFSPDWSALKDPGVYLAAISQAFFTLSLGMGALITYGSYVSKDSRLPGAAVSVAGLDTAFAIIAGIMIFPAVFALGLSPSGGPGLVFVVLPDIFDSIRLGPIVGIAFFILLGAAALSSAVSLLEVPVAYFMRKFDWSRKQAAITLGVIITLLGIPSSLSFGVLGEVTIIPGLNIFDSVDFIASSVFLPLGGMIIALFIGWGWKTSDALAESDLTDSVWGKLWILSLRFIAPIAILIVFLSAFQW 601
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446  ||
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          449|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                           601
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4US4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4US4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4US4)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Q9KDT3_BACHD | Q9KDT3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9KDT3_BACHD | Q9KDT3: 4us3

(-) Related Entries Specified in the PDB File

4us3 CRYSTAL STRUCTURE OF THE BACTERIAL NSS MEMBER MHST IN AN OCCLUDED INWARD-FACING STATE