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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BACTERIAL NSS MEMBER MHST IN AN OCCLUDED INWARD-FACING STATE
 
Authors :  L. Malinauskaite, M. Quick, L. Reinhard, J. A. Lyons, H. Yano, J. A. Javi P. Nissen
Date :  02 Jul 14  (Deposition) - 24 Sep 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Transport Protein, Neurotransmitter, Neurotransmitter Sodium Symporter Family, Leut Fold, Amino Acid Transporter, Secondary Transporter, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Malinauskaite, M. Quick, L. Reinhard, J. A. Lyons, H. Yano, J. A. Javitch, P. Nissen
A Mechanism For Intracellular Release Of Na+ By Neurotransmitter/Sodium Symporters
Nat. Struct. Mol. Biol. V. 21 1006 2014
PubMed-ID: 25282149  |  Reference-DOI: 10.1038/NSMB.2894

(-) Compounds

Molecule 1 - TRANSPORTER
    Atcc: BAA-125
    Chains: A
    Engineered: YES
    Expression System: LACTOCOCCUS LACTIS SUBSP. CREMORIS NZ9000
    Expression System Plasmid: PNZ8048
    Expression System Taxid: 746361
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS HALODURANS
    Organism Taxid: 272558
    Strain: C-125
    Synonym: MULTI-HYDROPHOBIC AMINO ACID TRANSPORTER

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1BNG4Ligand/IonB-NONYLGLUCOSIDE
2LMU6Ligand/IonDODECYL-ALPHA-D-MALTOSIDE
3NA2Ligand/IonSODIUM ION
4TRP1Mod. Amino AcidTRYPTOPHAN

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:25 , ALA A:26 , GLY A:28 , LEU A:29 , GLY A:30 , ASN A:31 , TYR A:108 , PHE A:230 , THR A:231 , SER A:233 , MET A:236 , SER A:324 , SER A:327 , LEU A:328 , NA A:702BINDING SITE FOR RESIDUE TRP A 601
02AC2SOFTWAREGLY A:24 , VAL A:27 , ALA A:320 , SER A:323 , SER A:324 , HOH A:2006BINDING SITE FOR RESIDUE NA A 701
03AC3SOFTWAREALA A:26 , ASN A:31 , THR A:231 , ASP A:263 , TRP A:601BINDING SITE FOR RESIDUE NA A 702
04AC4SOFTWARELYS A:201 , PHE A:208 , GLU A:371 , VAL A:372 , THR A:373 , HOH A:2050BINDING SITE FOR RESIDUE BNG A1449
05AC5SOFTWAREPHE A:208 , SER A:209 , PRO A:210 , HOH A:2068BINDING SITE FOR RESIDUE BNG A1450
06AC6SOFTWAREASN A:145 , PRO A:146 , THR A:147 , ALA A:189 , ILE A:192 , TYR A:193 , THR A:196 , LMU A:1454 , HOH A:2047BINDING SITE FOR RESIDUE BNG A1451
07AC7SOFTWARELEU A:116 , PHE A:117 , PHE A:138 , GLY A:141 , PHE A:142 , ASN A:145 , LEU A:148 , TRP A:152 , LEU A:155 , LMU A:1453 , HOH A:2039BINDING SITE FOR RESIDUE LMU A1452
08AC8SOFTWARETHR A:147 , LMU A:1452 , LMU A:1454BINDING SITE FOR RESIDUE LMU A1453
09AC9SOFTWAREILE A:158 , BNG A:1451 , LMU A:1453BINDING SITE FOR RESIDUE LMU A1454
10BC1SOFTWARETRP A:162 , ILE A:166BINDING SITE FOR RESIDUE LMU A1455
11BC2SOFTWARETRP A:342 , GLN A:346BINDING SITE FOR RESIDUE LMU A1456
12BC3SOFTWARETYR A:221 , ILE A:442 , VAL A:443 , SER A:446BINDING SITE FOR RESIDUE LMU A1457
13BC4SOFTWAREALA A:189 , TYR A:193 , SER A:302 , ARG A:304BINDING SITE FOR RESIDUE BNG A1458

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4US3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4US3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4US3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4US3)

(-) Exons   (0, 0)

(no "Exon" information available for 4US3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4us3 A   8 GREQWASRLGFILAAMGSAVGLGNIWRFSYVTGENGGAAFLLVYLGFIALIGIPIVLAEFTIGRRAQSDAVGSFEKLAPGKPWKVAGLMGVAAGFLILSFYGVIAGWILFYLFNYITGQLWSAPAEGFGGFFEGFIANPTLPLFWQALFMIATIWIVAIGVKKGIERSNKILMPLLGVLLIALAIYSLTLGGAKEGLAFLFSPDWSALKDPGVYLAAISQAFFTLSLGMGALITYGSYVSKDSRLPGAAVSVAGLDTAFAIIAGIMIFPAVFALGLSPSGGPGLVFVVLPDIFDSIRLGPIVGIAFFILLGAAALSSAVSLLEVPVAYFMRKFDWSRKQAAITLGVIITLLGIPSSLSFGVLGEVTIIPGLNIFDSVDFIASSVFLPLGGMIIALFIGWGWKTSDALAESDLTDSVWGKLWILSLRFIAPIAILIVFLSAFW 601
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447||
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  448|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   601
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4US3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4US3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4US3)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q9KDT3_BACHD | Q9KDT3: 4us4

(-) Related Entries Specified in the PDB File

4us4 CRYSTAL STRUCTURE OF THE BACTERIAL NSS MEMBER MHST IN AN OCCLUDED INWARD-FACING STATE (LIPIDIC CUBIC PHASE FORM)