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(-) Description

Title :  STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ MET29ILE MUTANT
 
Authors :  S. G. Vachieri, P. J. Collins, L. F. Haire, R. W. Ogrodowicz, S. R. Martin P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Date :  31 May 14  (Deposition) - 23 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Viral Protein, Equine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Collins, S. G. Vachieri, L. F. Haire, R. W. Ogrodowicz, S. R. Martin, P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Recent Evolution Of Equine Influenza And The Origin Of Canine Influenza.
Proc. Natl. Acad. Sci. Usa V. 111 11175 2014
PubMed-ID: 25024224  |  Reference-DOI: 10.1073/PNAS.1406606111

(-) Compounds

Molecule 1 - HA1
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PACGP67 DERIVATIVE
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Mutation: YES
    Organism Scientific: INFLUENZA A VIRUS (A/CANINE/COLORADO/17864/2006(H3N8))
    Organism Taxid: 867285
    Other Details: DR. EDWARD J. DUBOVI AND DR. COLIN PARRISH, CORNELL UNIVERSITY, ITHACA, NY, USA
    Synonym: HEMAGGLUTININ, H3 HAEMAGGLUTININ HA1 CHAIN
 
Molecule 2 - HA2
    Chains: B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PACGP67 DERIVATIVE
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Organism Scientific: INFLUENZA A VIRUS (A/CANINE/COLORADO/17864/2006(H3N8))
    Organism Taxid: 867285
    Other Details: DR. EDWARD J. DUBOVI AND DR. COLIN PARRISH, CORNELL UNIVERSITY, ITHACA, NY, USA
    Synonym: HEMAGGLUTININ, H3 HAEMAGGLUTININ HA2 CHAIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 21)

Asymmetric Unit (4, 21)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2MAN2Ligand/IonALPHA-D-MANNOSE
3NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO44Ligand/IonSULFATE ION
Biological Unit 1 (4, 63)
No.NameCountTypeFull Name
1BMA12Ligand/IonBETA-D-MANNOSE
2MAN6Ligand/IonALPHA-D-MANNOSE
3NAG33Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO412Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:57BINDING SITE FOR RESIDUE SO4 A1327
02AC2SOFTWAREGLN A:3 , GLU A:325 , TRP B:14 , GLU B:15 , GLY B:16 , ARG B:25BINDING SITE FOR RESIDUE SO4 B1173
03AC3SOFTWARESER A:95 , PRO A:99 , TYR A:100 , ARG A:224BINDING SITE FOR RESIDUE SO4 A1328
04AC4SOFTWAREARG A:321 , ALA B:7BINDING SITE FOR RESIDUE SO4 A1329
05AC5SOFTWAREASN A:8 , ASN A:9BINDING SITE FOR MONO-SACCHARIDE NAG A 651 BOUND TO ASN A 8
06AC6SOFTWAREASN A:22BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 601 THROUGH NAG A 602 BOUND TO ASN A 22
07AC7SOFTWAREASN A:38 , THR A:318BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 621 THROUGH BMA A 623 BOUND TO ASN A 38
08AC8SOFTWAREASN A:63BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 611 THROUGH BMA A 613 BOUND TO ASN A 63
09AC9SOFTWAREASN A:165 , THR A:167 , SER A:219 , PRO A:221 , LEU A:222 , MET A:244 , HOH A:2018BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 631 THROUGH MAN A 637 BOUND TO ASN A 165
10BC1SOFTWARESER A:45 , ASN A:173 , ASN A:285 , VAL A:297 , ASN A:298BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 641 THROUGH MAN A 647 BOUND TO ASN A 285

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:14 -B:137
2A:52 -A:277
3A:64 -A:76
4A:97 -A:139
5A:281 -A:305
6B:144 -B:148

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asn A:4 -Pro A:5
2Lys A:54 -Ser A:55
3Glu A:325 -Lys A:326

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UOA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UOA)

(-) Exons   (0, 0)

(no "Exon" information available for 4UOA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeee......eee.......eee..eee.ee......eeee...eee....hhhhhhhhhhhhhhhh.....eeee..........ee..hhhhhhhhhhhhh...eee.......ee....eeeeee..eee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhhh....eeeee....eeee...............eeeeeeeee....eeeeeeee.eeee.eeee......eeee....eeeee..eee..ee......ee......eee..ee......eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uoa A   3 QNPSGNNTATLCLGHHAVANGTLVKTISDDQIEVTNATELVQSISMGKICNKSYRILDGRNCTLIDAMLGDPHCDAFQYESWDLFIERSNAFSNCYPYDIPDYASLRSIVASSGTVEFTAEGFTWTGVTQNGRSGACKRGSADSFFSRLNWLTKSGSSYPTLNVTMPNNKNFDKLYIWGIHHPSSNQEQTKLYIQESGRVTVSTKRSQQTIIPNIGSRPLVRGQSGRISIYWTIVKPGDILMINSNGNLVAPRGYFKLNTGKSSVMRSDVPIDICVSECITPNGSISNDKPFQNVNKVTYGKCPKYIRQNTLKLATGMRNVPEK 326
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322    


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh....ee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoa B   1 GIFGAIAGFIENGWEGMVDGWYGFRYQNSEGTGQAADLKSTQAAIDQINGKLNRVIERTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDAEMNKLFEKTRRQLRENAEDMGDGCFKIYHKCDNACIESIRTGTYDHYVYRDEALNNRFQ 172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UOA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UOA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UOA)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:4 - Pro A:5   [ RasMol ]  
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    Lys A:54 - Ser A:55   [ RasMol ]  
 
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  4uoa
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        E0UVR5_9INFA | E0UVR5: 4uo4 4uo5 4uo6 4uo7 4uo8 4uo9

(-) Related Entries Specified in the PDB File

4unw STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ
4unx STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN COMPLEX WITH 3SLN
4uny STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN COMPLEX WITH 6SO4-3SLN
4unz STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN COMPLEX WITH 6SO4-SIALYL LEWIS X
4uo0 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ
4uo1 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ IN COMPLEX WITH 3SLN
4uo2 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ IN COMPLEX WITH SIALYL LEWIS X
4uo3 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ MUTANT SER30THR
4uo4 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ
4uo5 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH 3SLN
4uo6 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH SIALYL LEWIS X
4uo7 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH 6SO4 SIALYL LEWIS X
4uo8 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH 6SO4-3SLN
4uo9 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ SER30THR MUTANT