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(-) Description

Title :  STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH SIALYL LEWIS X
 
Authors :  S. G. Vachieri, P. J. Collins, L. F. Haire, R. W. Ogrodowicz, S. R. Martin P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Date :  31 May 14  (Deposition) - 23 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Viral Protein, Equine, Canine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Collins, S. G. Vachieri, L. F. Haire, R. W. Ogrodowicz, S. R. Martin, P. A. Walker, X. Xiong, S. J. Gamblin, J. J. Skehel
Recent Evolution Of Equine Influenza And The Origin Of Canine Influenza.
Proc. Natl. Acad. Sci. Usa V. 111 11175 2014
PubMed-ID: 25024224  |  Reference-DOI: 10.1073/PNAS.1406606111

(-) Compounds

Molecule 1 - H3 HAEMAGGLUTININ HA1 CHAIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PACGP67 DERIVATIVE
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 17-344
    Organism Scientific: INFLUENZA A VIRUS (A/CANINE/COLORADO/17864/2006(H3N8))
    Organism Taxid: 867285
    Other Details: DR. EDWARD J. DUBOVI AND DR. COLIN PARRISH, CORNELL UNIVERSITY, ITHACA, NY, USA
    Strain: A/CANINE/COLORADO/17864/06
    Synonym: HEMAGGLUTININ
 
Molecule 2 - H3 HAEMAGGLUTININ HA2 CHAIN
    Chains: B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PACGP67 DERIVATIVE
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: RESIDUES 345-516
    Organism Scientific: INFLUENZA A VIRUS (A/CANINE/COLORADO/17864/2006(H3N8))
    Organism Taxid: 867285
    Other Details: DR. EDWARD J. DUBOVI AND DR. COLIN PARRISH, CORNELL UNIVERSITY, ITHACA, NY, USA
    Strain: A/CANINE/COLORADO/17864/06
    Synonym: HEMAGGLUTININ

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 19)

Asymmetric Unit (7, 19)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2FUC1Ligand/IonALPHA-L-FUCOSE
3GAL1Ligand/IonBETA-D-GALACTOSE
4MAN2Ligand/IonALPHA-D-MANNOSE
5NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA1Ligand/IonO-SIALIC ACID
7SO43Ligand/IonSULFATE ION
Biological Unit 1 (7, 57)
No.NameCountTypeFull Name
1BMA6Ligand/IonBETA-D-MANNOSE
2FUC3Ligand/IonALPHA-L-FUCOSE
3GAL3Ligand/IonBETA-D-GALACTOSE
4MAN6Ligand/IonALPHA-D-MANNOSE
5NAG27Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA3Ligand/IonO-SIALIC ACID
7SO49Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:22 , ASN A:38 , NAG A:621 , MAN A:634BINDING SITE FOR RESIDUE NAG A 601
2AC2SOFTWARETRP B:14 , GLU B:15 , GLY B:16 , ARG B:25BINDING SITE FOR RESIDUE SO4 B1176
3AC3SOFTWAREILE A:34 , ARG A:321BINDING SITE FOR RESIDUE SO4 A1327
4AC4SOFTWAREARG A:135 , ARG A:141 , SER A:146BINDING SITE FOR RESIDUE SO4 A1328
5AC5SOFTWAREASN A:38 , THR A:40 , NAG A:601BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 621 THROUGH BMA A 623 BOUND TO ASN A 38
6AC6SOFTWAREARG A:62 , ASN A:63BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 611 THROUGH NAG A 612 BOUND TO ASN A 63
7AC7SOFTWAREASN A:165 , SER A:219 , PRO A:221 , LEU A:222 , ILE A:242 , NAG A:601BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 631 THROUGH MAN A 637 BOUND TO ASN A 165
8AC8SOFTWAREASN A:285 , VAL A:297 , GLU B:69BINDING SITE FOR MONO-SACCHARIDE NAG A 641 BOUND TO ASN A 285
9AC9SOFTWARETYR A:98 , ARG A:135 , SER A:136 , GLY A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , GLY A:225 , GLN A:226 , HOH A:2016BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A 701 THROUGH FUC A 704

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:14 -B:137
2A:52 -A:277
3A:64 -A:76
4A:97 -A:139
5A:281 -A:305
6B:144 -B:148

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:54 -Ser A:55

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UO6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UO6)

(-) Exons   (0, 0)

(no "Exon" information available for 4UO6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......eee.......eee..eee.ee......eeee...eee....hhhhhhhhhhhhhhhhhh...eeee..........ee..hhhhhhhhhhhhh...eee.......ee....eeeeee..eee....eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhh.....eeeee....eeee...............eeeeeeeee....eeeeeeee.eeee.eeee......eeee....eeeee..eee..ee......ee......eee..ee......eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uo6 A   8 NNTATLCLGHHAVANGTLVKTMSDDQIEVTNATELVQSISMGKICNKSYRILDGRNCTLIDAMLGDPHCDAFQYESWDLFIERSNAFSNCYPYDIPDYASLRSIVASSGTVEFTAEGFTWTGVTQNGRSGACKRGSADSFFSRLNWLTKSGSSYPTLNVTMPNNKNFDKLYIWGIHHPSSNQEQTKLYIQESGRVTVSTKRSQQTIIPNIGSRPLVRGQSGRISIYWTIVKPGDILMINSNGNLVAPRGYFKLNTGKSSVMRSDVPIDICVSECITPNGSISNDKPFQNVNKVTYGKCPKYIRQNTLKLATGMRNVPEK 326
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317         


Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhh.hhhhh.....ee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh.......hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uo6 B   1 GIFGAIAGFIENGWEGMVDGWYGFRYQNSEGTGQAADLKSTQAAIDQINGKLNRVIERTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQHTIDLTDAEMNKLFEKTRRQLRENAEDMGDGCFKIYHKCDNACIESIRTGTYDHYIYRDEALNNRFQSGR 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UO6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UO6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UO6)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        E0UVR5_9INFA | E0UVR5: 4uo4 4uo5 4uo7 4uo8 4uo9 4uoa

(-) Related Entries Specified in the PDB File

4unw STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ
4unx STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN COMPLEX WITH 3SLN
4uny STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN COMPLEX WITH 6SO4-3SLN
4unz STRUCTURE OF THE A_EQUINE_NEWMARKET_2_93 H3 HAEMAGGLUTININ IN COMPLEX WITH 6SO4-SIALYL LEWIS X
4uo0 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ
4uo1 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ IN COMPLEX WITH 3SLN
4uo2 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ IN COMPLEX WITH SIALYL LEWIS X
4uo3 STRUCTURE OF THE A_EQUINE_RICHMOND_07 H3 HAEMAGGLUTININ MUTANT SER30THR
4uo4 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ
4uo5 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH 3SLN
4uo7 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH 6SO4 SIALYL LEWIS X
4uo8 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ IN COMPLEX WITH 6SO4-3SLN
4uo9 STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ SER30THR MUTANT
4uoa STRUCTURE OF THE A_CANINE_COLORADO_17864_06 H3 HAEMAGGLUTININ MET29ILE MUTANT