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(-) Description

Title :  STRUCTURE OF LEPTOSPIRA INTERROGANS LRR PROTEIN LIC10831
 
Authors :  W. Shepard, F. A. Saul, A. Haouz, M. Picardeau
Date :  11 Jul 14  (Deposition) - 03 Jun 15  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Unknown Function, Lrr Protein, Pathogen, Virulence Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Miras, F. Saul, M. Nowakowski, P. Weber, A. Haouz, W. Shepard, M. Picardeau
Structural Characterization Of A Novel Subfamily Of Leucine-Rich Repeat Proteins From The Human Pathogen Leptospira Interrogans.
Acta Crystallogr. , Sect. D V. 71 1351 2015
PubMed-ID: 26057675  |  Reference-DOI: 10.1107/S139900471500704X

(-) Compounds

Molecule 1 - LIC10831
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PDEST17
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 34-377
    Gene: LIC_10831
    Mutation: YES
    Organism Scientific: LEPTOSPIRA INTERROGANS SEROVAR COPENHAGENI STR. FIOCRUZ L1-130
    Organism Taxid: 267671

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MSE1Mod. Amino AcidSELENOMETHIONINE
3ZN4Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:89 , GLU A:276 , ASN A:277 , HOH A:506 , HOH A:522binding site for residue ZN A 401
2AC2SOFTWARETYR A:144 , HIS A:146 , ASP A:167 , CL A:406 , HOH A:560binding site for residue ZN A 402
3AC3SOFTWARELYS A:155 , ASN A:178 , GLU A:179 , GLU A:342binding site for residue ZN A 403
4AC4SOFTWAREHIS A:146 , GLU A:193 , CL A:407 , HOH A:623binding site for residue ZN A 404
5AC5SOFTWAREPHE A:305 , SER A:307 , SER A:328binding site for residue CL A 405
6AC6SOFTWAREHIS A:146 , ASP A:167 , SER A:169 , TYR A:190 , TYR A:262 , ZN A:402 , HOH A:537binding site for residue CL A 406
7AC7SOFTWAREGLU A:193 , ZN A:404binding site for residue CL A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U06)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4U06)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U06)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U06)

(-) Exons   (0, 0)

(no "Exon" information available for 4U06)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:344
                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee.........hhhhhhh....eee......hhhhhhhhhhhh...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u06 A  34 TYRDLTKALQNPLEVRVLDLSRQELKTLPIEIGKLKNLQRLYLHYNQLTVLPQEIEQLKNLQLLYLRSNRLTTLPKEIEQLKNLQVLDLGSNQLTVLPQEIGQLKNLQLLYLHSNRLTTLSKDIEQLQNLKSLDLSNNQLTTLPNEIEQLKNLKSLYLSENQFATFPKEIGQLQNLKVLFLNNNQITILPNEIAKLKKLQYLYLSDNQLITLPKEIEQLKNLQTLDLSYNQLmILPKEVGQLENLQTLDLRNNQLKTLPKEIEQLKNLQTLFLSNNQLTILPQEIGKLKNLLWLSLVYNQLTTLPNEIEQLKNLQTLYLNNNQFSSQEKKRIRKLLPKCQIYFD 377
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263  |    273       283       293       303       313       323       333       343       353       363       373    
                                                                                                                                                                                                                                                                  266-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U06)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U06)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U06)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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(-) Related Entries Specified in the PDB File

4tzh 4u08 4u09