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(-) Description

Title :  CRYSTAL STRUCTURE OF CLA-ER WITH PRODUCT BINDING
 
Authors :  F. Hou, T. Miyakawa, M. Tanokura
Date :  13 Jun 14  (Deposition) - 25 Feb 15  (Release) - 11 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nadh Oxidase/Flavin Reductase Family, Enone Reductase, Ketoc, Fmn, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Hou, T. Miyakawa, N. Kitamura, M. Takeuchi, S. B. Park, S. Kishino, J. Ogawa, M. Tanokura
Structure And Reaction Mechanism Of A Novel Enone Reductase
Febs J. 2015
PubMed-ID: 25702712  |  Reference-DOI: 10.1111/FEBS.13239

(-) Compounds

Molecule 1 - NITROREDUCTASE FAMILY PROTEIN
    Chains: A, B
    EC Number: 1.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CLA-ER
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590
    Strain: AKU 1009A
    Synonym: CLA-ER

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1CL5Ligand/IonCHLORIDE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3KTC2Ligand/Ion10-OXOOCTADECANOIC ACID

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:20 , HIS A:21 , SER A:22 , ARG A:24 , ASN A:78 , GLN A:81 , ASN A:165 , ALA A:166 , PHE A:167 , SER A:168 , GLY A:169 , THR A:204 , ARG A:206 , HOH A:406 , HOH A:421 , PRO B:48 , SER B:49 , ALA B:50 , ASN B:52 , ILE B:144 , KTC B:301BINDING SITE FOR RESIDUE FMN A 301
2AC2SOFTWARECYS A:51 , TRP A:105 , ARG A:118 , ILE A:122 , PHE A:126 , LEU A:129 , TYR A:130 , PHE A:137 , HOH A:424 , ARG B:24 , SER B:168 , FMN B:302 , HOH B:493BINDING SITE FOR RESIDUE KTC A 302
3AC3SOFTWAREMET A:1 , SER A:2BINDING SITE FOR RESIDUE CL A 303
4AC4SOFTWAREGLY A:33 , GLU A:36BINDING SITE FOR RESIDUE CL A 304
5AC5SOFTWARELYS A:76BINDING SITE FOR RESIDUE CL A 305
6AC6SOFTWAREARG A:102BINDING SITE FOR RESIDUE CL A 306
7AC7SOFTWAREARG A:24 , SER A:168 , ILE A:170 , PHE A:172 , LEU A:202 , FMN A:301 , HOH A:506 , ALA B:50 , CYS B:51 , ARG B:118 , PHE B:126 , LEU B:129 , PHE B:137 , HOH B:494BINDING SITE FOR RESIDUE KTC B 301
8AC8SOFTWAREPRO A:48 , SER A:49 , ALA A:50 , ASN A:52 , ILE A:144 , KTC A:302 , HOH A:488 , ARG B:20 , HIS B:21 , SER B:22 , ARG B:24 , PHE B:77 , ASN B:78 , GLN B:81 , ASN B:165 , ALA B:166 , PHE B:167 , SER B:168 , GLY B:169 , THR B:204 , ARG B:206 , HOH B:402 , HOH B:408 , HOH B:458BINDING SITE FOR RESIDUE FMN B 302
9AC9SOFTWARELYS B:76BINDING SITE FOR RESIDUE CL B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QLX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4QLX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QLX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QLX)

(-) Exons   (0, 0)

(no "Exon" information available for 4QLX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhh.............hhhhhhhhhhhhh...hhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee......hhhhhhh.....eeeeeeeeee............hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qlx A   1 MSEAVKNLVNNDLADVMFNRHSVRQFDPNVKIGRDELQKMIAEAATAPSACNLQSWHFVVVDTPEAKAKFKQAVMKFNYPQVDSASAIVFIAGDTQSHYVYRDVWNKVYEDGNITKERLDQILGTFLPLYENATPDFLKFDATIDCSVVGMQLLLVARAHGYDANAFSGIDFEKMIPTLGLDPKRYVPVMGIAIGKAAQEPLHTTRYDAKTQTDFLA 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain B from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhh.............hhhhhhhhhhhhh...hhhhh..eeeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee......hhhhhhh.....eeeeeeeeee............hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4qlx B   8 LVNNDLADVMFNRHSVRQFDPNVKIGRDELQKMIAEAATAPSACNLQSWHFVVVDTPEAKAKFKQAVMKFNYPQVDSASAIVFIAGDTQSHYVYRDVWNKVYEDGNITKERLDQILGTFLPLYENATPDFLKFDATIDCSVVGMQLLLVARAHGYDANAFSGIDFEKMIPTLGLDPKRYVPVMGIAIGKAAQEPLHTTRYDAKTQTDFLA 217
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QLX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QLX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QLX)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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        U6C5W9_LACPN | U6C5W9: 4qly

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4qly