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(-) Description

Title :  STRUCTURAL BASIS FOR CA2+ SELECTIVITY OF A VOLTAGE-GATED CALCIUM CHANNEL
 
Authors :  L. Tang, T. M. Gamal El-Din, J. Payandeh, Q. M. Gilbert, T. M. Heard, T. S N. Zheng, W. A. Catterall
Date :  24 Sep 13  (Deposition) - 27 Nov 13  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Tetrameric, Voltage-Gated Ion Channel, Voltage-Gated Calcium Channel, Calcium Selective, Transport Protein, Membrane, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Tang, T. M. Gamal El-Din, J. Payandeh, G. Q. Martinez, T. M. Heard, T. Scheuer, N. Zheng, W. A. Catterall
Structural Basis For Ca2+ Selectivity Of A Voltage-Gated Calcium Channel.
Nature V. 505 56 2014
PubMed-ID: 24270805  |  Reference-DOI: 10.1038/NATURE12775

(-) Compounds

Molecule 1 - ION TRANSPORT PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PFASTBAC DUAL
    Expression System Taxid: 7111
    Expression System Vector Type: VIRUS
    Gene: ABU_1752
    Organism Scientific: ARCOBACTER BUTZLERI
    Organism Taxid: 367737
    Strain: RM4018

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric/Biological Unit (2, 17)
No.NameCountTypeFull Name
1MN1Ligand/IonMANGANESE (II) ION
2PX416Ligand/Ion1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:1401 , HOH A:1402 , HOH B:1401 , HOH C:1401 , HOH C:1402 , HOH D:1401BINDING SITE FOR RESIDUE MN A 1301
02AC2SOFTWARETYR A:1191 , ILE C:1097BINDING SITE FOR RESIDUE PX4 A 1302
03AC3SOFTWARETRP A:1195 , THR C:1162 , GLY C:1164 , PHE C:1167BINDING SITE FOR RESIDUE PX4 A 1303
04AC4SOFTWARETHR A:1162 , GLY A:1164 , PHE A:1167 , TRP B:1195BINDING SITE FOR RESIDUE PX4 A 1304
05AC5SOFTWARESER A:1034BINDING SITE FOR RESIDUE PX4 A 1306
06AC6SOFTWAREILE A:1097 , TYR B:1191BINDING SITE FOR RESIDUE PX4 B 1301
07AC7SOFTWARESER B:1034 , LYS B:1035BINDING SITE FOR RESIDUE PX4 B 1303
08AC8SOFTWARETYR C:1191 , ILE D:1097BINDING SITE FOR RESIDUE PX4 C 1301
09AC9SOFTWARETRP C:1195 , GLY D:1164 , PHE D:1167BINDING SITE FOR RESIDUE PX4 C 1302
10BC1SOFTWAREMET C:1174BINDING SITE FOR RESIDUE PX4 C 1303
11BC2SOFTWARESER C:1034 , THR C:1036BINDING SITE FOR RESIDUE PX4 C 1304
12BC3SOFTWAREGLY B:1164 , PHE B:1167 , TRP D:1195BINDING SITE FOR RESIDUE PX4 D 1301
13BC4SOFTWAREILE B:1097 , TYR D:1191BINDING SITE FOR RESIDUE PX4 D 1302
14BC5SOFTWARETHR C:1162 , SER D:1034 , LYS D:1035BINDING SITE FOR RESIDUE PX4 D 1304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MVR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MVR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MVR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MVR)

(-) Exons   (0, 0)

(no "Exon" information available for 4MVR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mvr A 1001 MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSDGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVD 1219
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210         


Chain B from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mvr B 1001 MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSDGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVD 1219
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210         


Chain C from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mvr C 1001 MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSDGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVD 1219
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210         


Chain D from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4mvr D 1001 MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSDGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVD 1219
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MVR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MVR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MVR)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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        A8EVM5_ARCB4 | A8EVM5: 3rvy 3rvz 3rw0 4ekw 4ms2 4mtf 4mtg 4mto 4mvm 4mvo 4mvq 4mvs 4mvu 4mvz 4mw3 4mw8 5ek0 5klb 5klg 5kls 5kmd 5kmf 5kmh 5vb2 5vb8

(-) Related Entries Specified in the PDB File

4ms2 4mtf 4mtg 4mto 4mvm 4mvo 4mvq