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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CAVAB VOLTAGE-GATED CALCIUM CHANNEL(WILD-TYPE, 2.7A)
 
Authors :  L. Tang, T. M. Gamal El-Din, T. M. Swanson, D. C. Pryde, T. Scheuer, N. Zh W. A. Catterall
Date :  23 Jun 16  (Deposition) - 31 Aug 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Voltage-Gated Calcium Channel, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Tang, T. M. El-Din, T. M. Swanson, D. C. Pryde, T. Scheuer, N. Zheng, W. A. Catterall
Structural Basis For Inhibition Of A Voltage-Gated Ca(2+) Channel By Ca(2+) Antagonist Drugs.
Nature V. 537 117 2016
PubMed-ID: 27556947  |  Reference-DOI: 10.1038/NATURE19102

(-) Compounds

Molecule 1 - ION TRANSPORT PROTEIN
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System PlasmidPFASTBAC DUAL
    Expression System Taxid7111
    Expression System Vector TypeVIRUS
    GeneABU_1752
    Organism ScientificARCOBACTER BUTZLERI (STRAIN RM4018)
    Organism Taxid367737
    StrainRM4018

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 29)

Asymmetric/Biological Unit (3, 29)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2CPS6Ligand/Ion3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
3MC320Ligand/Ion1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:1075 , TRP A:1076 , PHE A:1079 , PHE A:1107 , SER A:1121 , LEU C:1136binding site for residue MC3 A 1301
02AC2SOFTWARELEU A:1151 , PHE A:1152 , ARG A:1155 , VAL A:1190 , TYR A:1191 , ILE D:1097binding site for residue MC3 A 1303
03AC3SOFTWARESER A:1070 , LYS A:1073 , MET D:1001 , TYR D:1002 , LEU D:1003binding site for residue CPS A 1304
04AC4SOFTWAREALA A:1122 , VAL A:1126 , VAL C:1126 , GLY C:1129 , ALA C:1215 , ASP C:1219binding site for residue CPS A 1305
05AC5SOFTWAREGLY A:1129 , ALA A:1215 , ASP A:1219 , SER D:1125binding site for residue CPS A 1306
06AC6SOFTWAREASN A:1225 , GLU A:1228 , ASN B:1225 , GLU B:1228 , ASN C:1225 , GLU C:1228 , ASN D:1225 , GLU D:1228binding site for residue CA B 1301
07AC7SOFTWAREPRO B:1075 , TRP B:1076 , PHE B:1079 , PHE B:1107 , SER B:1121binding site for residue MC3 B 1302
08AC8SOFTWAREGLY B:1030 , SER B:1034 , THR B:1036 , LEU B:1106 , THR D:1138 , LEU D:1139 , THR D:1162 , GLY D:1164 , MC3 D:1304binding site for residue MC3 B 1303
09AC9SOFTWAREMET B:1188 , PRO B:1192 , TRP B:1195 , ILE B:1199 , ILE C:1134 , GLY C:1164 , GLU C:1165 , PHE C:1167 , MC3 C:1307binding site for residue MC3 B 1304
10AD1SOFTWAREPHE B:1144 , LEU B:1151 , TYR B:1191 , TYR B:1193 , LEU C:1104binding site for residue MC3 B 1305
11AD2SOFTWAREMC3 C:1305binding site for residue MC3 B 1306
12AD3SOFTWAREVAL B:1126 , GLY B:1129 , ALA B:1215 , ILE B:1216 , ALA B:1220 , VAL C:1126binding site for residue CPS B 1307
13AD4SOFTWAREMET B:1001 , TYR B:1002 , LEU B:1003 , ARG B:1004 , SER C:1070binding site for residue CPS B 1308
14AD5SOFTWARETRP C:1076 , PHE C:1079 , PHE C:1107 , ILE C:1124binding site for residue MC3 C 1301
15AD6SOFTWARETHR B:1138 , TYR B:1142 , THR B:1162 , LEU B:1163 , GLY B:1164 , GLY C:1026 , GLY C:1030 , THR C:1033 , SER C:1034 , THR C:1036 , LEU C:1106 , MC3 D:1305binding site for residue MC3 C 1302
16AD7SOFTWAREMET A:1137 , THR A:1162 , GLY A:1164 , GLU A:1165 , PHE A:1167 , MET C:1188 , PRO C:1192 , TRP C:1195 , ILE C:1199 , MC3 D:1303binding site for residue MC3 C 1303
17AD8SOFTWARELEU A:1104 , PHE C:1144 , LEU C:1151 , TYR C:1191 , TYR C:1193 , ALA C:1194binding site for residue MC3 C 1304
18AD9SOFTWAREMC3 B:1306 , MET C:1174 , MET C:1209binding site for residue MC3 C 1305
19AE1SOFTWAREPHE C:1203 , THR C:1206binding site for residue MC3 C 1306
20AE2SOFTWAREGLY A:1026 , ILE A:1027 , SER A:1034 , LYS A:1035 , THR A:1036 , LEU A:1106 , MC3 B:1304 , THR C:1138 , TYR C:1142 , THR C:1162 , LEU C:1163 , GLY C:1164binding site for residue MC3 C 1307
21AE3SOFTWAREHOH A:1401 , HOH B:1401 , HOH B:1404 , HOH C:1401 , HOH D:1401 , HOH D:1403binding site for residue CA D 1301
22AE4SOFTWAREPRO D:1075 , TRP D:1076 , SER D:1121binding site for residue MC3 D 1302
23AE5SOFTWARELEU A:1139 , TYR A:1142 , THR A:1162 , GLY A:1164 , MC3 C:1303 , ILE D:1027 , GLY D:1030 , THR D:1033 , SER D:1034 , THR D:1036 , LEU D:1106binding site for residue MC3 D 1303
24AE6SOFTWAREMET A:1188 , PRO A:1192 , TRP A:1195 , ILE A:1199 , MC3 B:1303 , ILE D:1134 , PHE D:1141 , GLY D:1164 , GLU D:1165 , PHE D:1167 , TYR D:1168 , PHE D:1171binding site for residue MC3 D 1304
25AE7SOFTWARETHR B:1162 , GLY B:1164 , GLU B:1165 , PHE B:1167 , MET B:1209 , MC3 C:1302 , PRO D:1192 , TRP D:1195 , ILE D:1199binding site for residue MC3 D 1305
26AE8SOFTWAREPHE B:1095 , ILE B:1097 , PHE D:1144 , LEU D:1151 , ARG D:1155 , VAL D:1190 , TYR D:1191 , TYR D:1193 , ALA D:1194binding site for residue MC3 D 1306
27AE9SOFTWAREALA B:1122 , VAL B:1126 , GLY D:1129 , ALA D:1215 , ILE D:1216 , ASP D:1219 , ALA D:1220 , ILE D:1223binding site for residue CPS D 1308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KLB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KLB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KLB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KLB)

(-) Exons   (0, 0)

(no "Exon" information available for 5KLB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5klb A 1001 MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSNGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTSLKN 1267
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260       

Chain B from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5klb B 1001 MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSNGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTSLKN 1267
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260       

Chain C from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.....hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5klb C 1001 MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSNGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTSLKN 1267
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260       

Chain D from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5klb D 1001 MYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSNGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTSLKN 1267
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KLB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KLB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KLB)

(-) Gene Ontology  (7, 7)

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 Related Entries

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UniProtKB/TrEMBL
        A8EVM5_ARCB4 | A8EVM53rvy 3rvz 3rw0 4ekw 4ms2 4mtf 4mtg 4mto 4mvm 4mvo 4mvq 4mvr 4mvs 4mvu 4mvz 4mw3 4mw8 5ek0 5klg 5kls 5kmd 5kmf 5kmh 5vb2 5vb8

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