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(-) Description

Title :  RACEMIC-[RU(PHEN)2(DPPZ)]2+] BOUND TO SYNTHETIC DNA AT HIGH RESOLUTION
 
Authors :  D. S. Cook, J. P. Hall, C. J. Cardin
Date :  24 Feb 13  (Deposition) - 24 Apr 13  (Release) - 18 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.16
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Intercalation, Racemic Ligand-Dna, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. P. Hall, D. Cook, S. R. Morte, P. Mcintyre, K. Buchner, H. Beer, D. J. Cardin, J. A. Brazier, G. Winter, J. M. Kelly, C. J. Cardin
X-Ray Crystal Structure Of Rac-[Ru(Phen)2Dppz](2+) With D(Atgcat)2 Shows Enantiomer Orientations And Water Ordering
J. Am. Chem. Soc. V. 135 12652 2013
PubMed-ID: 23875832  |  Reference-DOI: 10.1021/JA403590E

(-) Compounds

Molecule 1 - DNA (5'-D(*AP*TP*GP*CP*AP*T)-3')
    ChainsA, B
    EngineeredYES
    Other DetailsDNA PURCHASED FROM ATDBIO
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
10TN1Ligand/IonDELTA-RU(PHEN)2(DPPZ) COMPLEX
2K1Ligand/IonPOTASSIUM ION
3RKP1Ligand/IonLAMBDA-RU(PHEN)2(DPPZ) COMPLEX

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT A:2 , DG A:3 , DC A:4 , DT A:6 , DA B:1 , DC B:4 , DA B:5 , DT B:6BINDING SITE FOR RESIDUE 0TN B 101
2AC2SOFTWAREDA A:1 , DC A:4 , DA A:5 , DT A:6 , DT B:2 , DG B:3 , DA B:5 , DT B:6BINDING SITE FOR RESIDUE RKP B 102
3AC3SOFTWAREDC B:4 , HOH B:216 , HOH B:241 , HOH B:245 , HOH B:248BINDING SITE FOR RESIDUE K B 103

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:6
                                    
                   4jd8 A 1 ATGCAT 6

Chain B from PDB  Type:DNA  Length:6
                                    
                   4jd8 B 1 ATGCAT 6

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(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

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