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(-) Description

Title :  A DE NOVO DESIGNED COILED COIL CC-TRI
 
Authors :  M. Bruning, A. R. Thomson, N. R. Zaccai, R. L. Brady, D. N. Woolfson
Date :  01 Mar 12  (Deposition) - 29 Aug 12  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  G,H,I  (1x)
Biol. Unit 3:  D,E,F  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Fletcher, A. L. Boyle, M. Bruning, G. J. Bartlett, T. L. Vincent, N. R. Zaccai, C. T. Armstrong, E. H. Bromley, P. J. Booth, R. L. Brady, A. R. Thomson, D. N. Woolfson
A Basis Set Of De Novo Coiled-Coil Peptide Oligomers For Rational Protein Design And Synthetic Biology.
Acs Synth Biol V. 1 240 2012
PubMed-ID: 23651206  |  Reference-DOI: 10.1021/SB300028Q

(-) Compounds

Molecule 1 - COILED-COIL PEPTIDE CC-TRI
    Chains: A, I, C, B, E, F, G, H, J, D, K, L
    Engineered: YES
    Other Details: SOLID STATE PEPTIDE SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):       GHI   
Biological Unit 3 (1x):    DEF      
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric Unit (2, 19)
No.NameCountTypeFull Name
1ACE7Mod. Amino AcidACETYL GROUP
2PHI12Mod. Amino AcidIODO-PHENYLALANINE
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2PHI3Mod. Amino AcidIODO-PHENYLALANINE
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2PHI3Mod. Amino AcidIODO-PHENYLALANINE
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2PHI3Mod. Amino AcidIODO-PHENYLALANINE
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2PHI3Mod. Amino AcidIODO-PHENYLALANINE

(-) Sites  (0, 0)

(no "Site" information available for 4DZL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DZL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DZL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DZL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DZL)

(-) Exons   (0, 0)

(no "Exon" information available for 4DZL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4dzl A  0 xGEIAAIKQEIAAIKKEIAAIKfEIAAIKQG 30
                            |        9        19  |     29 
                            |                    22-PHI    
                            0-ACE                          


Chain B from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  4dzl B  0 xGEIAAIKQEIAAIKKEIAAIKfEIAAIKQGYG 32
                            |        9        19  |     29   
                            0-ACE                22-PHI      


Chain C from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  4dzl C  0 xGEIAAIKQEIAAIKKEIAAIKfEIAAIKQGYG 32
                            |        9        19  |     29   
                            0-ACE                22-PHI      


Chain D from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  4dzl D  3 IAAIKQEIAAIKKEIAAIKfEIAAIKQ 29
                                    12        22       
                                              22-PHI   


Chain E from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4dzl E  2 EIAAIKQEIAAIKKEIAAIKfEIAAIKQGYG 32
                                    11        21|       31 
                                               22-PHI      


Chain F from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  4dzl F  0 xGEIAAIKQEIAAIKKEIAAIKfEIAAIKQGYG 32
                            |        9        19  |     29   
                            0-ACE                22-PHI      


Chain G from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4dzl G  2 EIAAIKQEIAAIKKEIAAIKfEIAAIKQ 29
                                    11        21|       
                                               22-PHI   


Chain H from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4dzl H  0 xGEIAAIKQEIAAIKKEIAAIKfEIAAIKQG 30
                            |        9        19  |     29 
                            0-ACE                22-PHI    


Chain I from PDB  Type:PROTEIN  Length:32
                                                               
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                  4dzl I  0 xGEIAAIKQEIAAIKKEIAAIKfEIAAIKQGY 31
                            |        9        19  |     29  
                            0-ACE                22-PHI     


Chain J from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4dzl J  0 xGEIAAIKQEIAAIKKEIAAIKfEIAAIKQG 30
                            |        9        19  |     29 
                            0-ACE                22-PHI    


Chain K from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  4dzl K  1 GEIAAIKQEIAAIKKEIAAIKfEIAAIKQG 30
                                    10        20 |      30
                                                22-PHI    


Chain L from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  4dzl L  5 AIKQEIAAIKKEIAAIKfEIAAIKQGY 31
                                    14       |24       
                                            22-PHI
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DZL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DZL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DZL)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4DZL)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4dzk 4dzm 4dzn