3R1C - JenaLib

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3R1C

RNA

Asymmetric Unit

Asym. Unit - sites

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Description

Title :   CRYSTAL STRUCTURE OF GCGGCGGC DUPLEX

Authors :   A. Kiliszek, R. Kierzek, W. J. Krzyzosiak, W. Rypniewski

Date :   10 Mar 11 (Deposition) - 01 Jun 11 (Release) - 14 Sep 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)
Biol. Unit 5: I,J  (1x)
Biol. Unit 6: K,L  (1x)
Biol. Unit 7: M,N  (1x)
Biol. Unit 8: O,P  (1x)
Biol. Unit 9: Q,R  (1x)
Biol. Unit 10: S,Y  (1x)
Biol. Unit 11: T,U  (1x)
Biol. Unit 12: W,X  (1x)
Biol. Unit 13: V,Z  (1x)
Biol. Unit 14: a,b  (1x)
Biol. Unit 15: c,d  (1x)
Biol. Unit 16: e,f  (1x)
Biol. Unit 17: g,h  (1x)
Biol. Unit 18: i,j  (1x)

Keywords :   Cgg Repeats, Fragile X Mental Retardation, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Kiliszek, R. Kierzek, W. J. Krzyzosiak, W. Rypniewski
Crystal Structures Of Cgg Rna Repeats With Implications For Fragile X-Associated Tremor Ataxia Syndrome.
Nucleic Acids Res. V. 39 7308 2011
PubMed-ID: 21596781 | Reference-DOI: 10.1093/NAR/GKR368

Compounds

*Molecule 1 - RNA (5'-R(GPCPGPGPCPGPGPC)-3')*
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, Y, T, U, W, X, V, Z, a, b, c, d, e, f, g, h, i, j
	Engineered	:	YES
	Other Details	:	THIS SEQUENCE IS FOUND IN HUMAN MRNA
	Synthetic	:	YES

Structural Features

Chains, Units

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L	M	N	O	P	Q	R	S	T	U	V	W	X	Y	Z	a	b	c	d	e	f	g	h	i	j
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H
Biological Unit 5 (1x)	:									I	J
Biological Unit 6 (1x)	:											K	L
Biological Unit 7 (1x)	:													M	N
Biological Unit 8 (1x)	:															O	P
Biological Unit 9 (1x)	:																	Q	R
Biological Unit 10 (1x)	:																			S						Y
Biological Unit 11 (1x)	:																				T	U
Biological Unit 12 (1x)	:																							W	X
Biological Unit 13 (1x)	:																						V				Z
Biological Unit 14 (1x)	:																											a	b
Biological Unit 15 (1x)	:																													c	d
Biological Unit 16 (1x)	:																															e	f
Biological Unit 17 (1x)	:																																	g	h
Biological Unit 18 (1x)	:																																			i	j

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 7)

Asymmetric Unit (1, 7)

No.	Name	Count	Type	Full Name
1	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 7 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 8 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 9 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 10 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 11 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 12 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 13 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 14 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 15 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 16 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 17 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 18 (0, 0)

No.	Name	Count	Type	Full Name
1	SO4	-1	Ligand/Ion	SULFATE ION

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	G S:6	BINDING SITE FOR RESIDUE SO4 S 9
2	AC2	SOFTWARE	C W:2 , G W:3 , G X:6	BINDING SITE FOR RESIDUE SO4 W 9
3	AC3	SOFTWARE	C X:2 , G X:3 , HOH X:472 , HOH X:474	BINDING SITE FOR RESIDUE SO4 X 9
4	AC4	SOFTWARE	C b:5 , G b:6	BINDING SITE FOR RESIDUE SO4 b 9
5	AC5	SOFTWARE	C c:2 , G c:3	BINDING SITE FOR RESIDUE SO4 c 9
6	AC6	SOFTWARE	HOH c:212 , G d:3	BINDING SITE FOR RESIDUE SO4 d 9
7	AC7	SOFTWARE	C e:2 , G e:3	BINDING SITE FOR RESIDUE SO4 e 9

SS Bonds (0, 0)

(no "SS Bond" information available for 3R1C)

Cis Peptide Bonds (0, 0)

(no "Cis Peptide Bond" information available for 3R1C)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

(no "SAP(SNP)/Variant" information available for 3R1C)

PROSITE Motifs (0, 0)

(no "PROSITE Motif" information available for 3R1C)

Exons (0, 0)

(no "Exon" information available for 3R1C)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:RNA  Length:8
                                      
                   3r1c A 1 GCGGCGGC 8

Chain B from PDB  Type:RNA  Length:8
                                      
                   3r1c B 1 GCGGCGGC 8

Chain C from PDB  Type:RNA  Length:8
                                      
                   3r1c C 1 GCGGCGGC 8

Chain D from PDB  Type:RNA  Length:8
                                      
                   3r1c D 1 GCGGCGGC 8

Chain E from PDB  Type:RNA  Length:8
                                      
                   3r1c E 1 GCGGCGGC 8

Chain F from PDB  Type:RNA  Length:8
                                      
                   3r1c F 1 GCGGCGGC 8

Chain G from PDB  Type:RNA  Length:8
                                      
                   3r1c G 1 GCGGCGGC 8

Chain H from PDB  Type:RNA  Length:8
                                      
                   3r1c H 1 GCGGCGGC 8

Chain I from PDB  Type:RNA  Length:8
                                      
                   3r1c I 1 GCGGCGGC 8

Chain J from PDB  Type:RNA  Length:8
                                      
                   3r1c J 1 GCGGCGGC 8

Chain K from PDB  Type:RNA  Length:8
                                      
                   3r1c K 1 GCGGCGGC 8

Chain L from PDB  Type:RNA  Length:8
                                      
                   3r1c L 1 GCGGCGGC 8

Chain M from PDB  Type:RNA  Length:8
                                      
                   3r1c M 1 GCGGCGGC 8

Chain N from PDB  Type:RNA  Length:8
                                      
                   3r1c N 1 GCGGCGGC 8

Chain O from PDB  Type:RNA  Length:8
                                      
                   3r1c O 1 GCGGCGGC 8

Chain P from PDB  Type:RNA  Length:8
                                      
                   3r1c P 1 GCGGCGGC 8

Chain Q from PDB  Type:RNA  Length:8
                                      
                   3r1c Q 1 GCGGCGGC 8

Chain R from PDB  Type:RNA  Length:8
                                      
                   3r1c R 1 GCGGCGGC 8

Chain S from PDB  Type:RNA  Length:8
                                      
                   3r1c S 1 GCGGCGGC 8

Chain T from PDB  Type:RNA  Length:8
                                      
                   3r1c T 1 GCGGCGGC 8

Chain U from PDB  Type:RNA  Length:8
                                      
                   3r1c U 1 GCGGCGGC 8

Chain V from PDB  Type:RNA  Length:8
                                      
                   3r1c V 1 GCGGCGGC 8

Chain W from PDB  Type:RNA  Length:8
                                      
                   3r1c W 1 GCGGCGGC 8

Chain X from PDB  Type:RNA  Length:8
                                      
                   3r1c X 1 GCGGCGGC 8

Chain Y from PDB  Type:RNA  Length:8
                                      
                   3r1c Y 1 GCGGCGGC 8

Chain Z from PDB  Type:RNA  Length:8
                                      
                   3r1c Z 1 GCGGCGGC 8

Chain a from PDB  Type:RNA  Length:8
                                      
                   3r1c a 1 GCGGCGGC 8

Chain b from PDB  Type:RNA  Length:8
                                      
                   3r1c b 1 GCGGCGGC 8

Chain c from PDB  Type:RNA  Length:8
                                      
                   3r1c c 1 GCGGCGGC 8

Chain d from PDB  Type:RNA  Length:8
                                      
                   3r1c d 1 GCGGCGGC 8

Chain e from PDB  Type:RNA  Length:8
                                      
                   3r1c e 1 GCGGCGGC 8

Chain f from PDB  Type:RNA  Length:8
                                      
                   3r1c f 1 GCGGCGGC 8

Chain g from PDB  Type:RNA  Length:8
                                      
                   3r1c g 1 GCGGCGGC 8

Chain h from PDB  Type:RNA  Length:8
                                      
                   3r1c h 1 GCGGCGGC 8

Chain i from PDB  Type:RNA  Length:8
                                      
                   3r1c i 1 GCGGCGGC 8

Chain j from PDB  Type:RNA  Length:8
                                      
                   3r1c j 1 GCGGCGGC 8

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

(no "SCOP Domain" information available for 3R1C)

CATH Domains (0, 0)

(no "CATH Domain" information available for 3R1C)

Pfam Domains (0, 0)

(no "Pfam Domain" information available for 3R1C)

Gene Ontology (0, 0)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3R1C)

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