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(-) Description

Title :  1.9 A RESOLUTION X-RAY STRUCTURE OF (GGCAGCAGCC)2
 
Authors :  A. Kiliszek, R. Kierzek, W. J. Krzyzosiak, W. Rypniewski
Date :  17 Jun 10  (Deposition) - 25 Aug 10  (Release) - 22 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Cag Repeats, Poly-Q Diseases, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kiliszek, R. Kierzek, W. J. Krzyzosiak, W. Rypniewski
Atomic Resolution Structure Of Cag Rna Repeats: Structural Insights And Implications For The Trinucleotide Repeat Expansion Diseases.
Nucleic Acids Res. V. 38 8370 2010
PubMed-ID: 20702420  |  Reference-DOI: 10.1093/NAR/GKQ700

(-) Compounds

Molecule 1 - 5'-R(*GP*GP*CP*AP*GP*CP*AP*GP*CP*C)-3'
    Chains: A, B, C, D, E, F
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREA A:7 , HOH A:64 , HOH A:183 , A B:4BINDING SITE FOR RESIDUE SO4 A 11
2AC2SOFTWAREA A:4 , A B:7 , HOH B:110BINDING SITE FOR RESIDUE SO4 B 11
3AC3SOFTWAREA C:7 , HOH C:50 , A D:4BINDING SITE FOR RESIDUE SO4 C 11
4AC4SOFTWAREA C:4 , A D:7 , HOH D:102BINDING SITE FOR RESIDUE SO4 D 11
5AC5SOFTWAREA E:4 , HOH E:159 , A F:7BINDING SITE FOR RESIDUE SO4 E 11
6AC6SOFTWAREA E:7 , A F:4BINDING SITE FOR RESIDUE SO4 E 12

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NJ7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NJ7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NJ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NJ7)

(-) Exons   (0, 0)

(no "Exon" information available for 3NJ7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:10
                                         
                  3nj7 A  1 GGCAGCAGCC 10
                                    10


Chain B from PDB  Type:RNA  Length:10
                                         
                  3nj7 B  1 GGCAGCAGCC 10
                                    10


Chain C from PDB  Type:RNA  Length:10
                                         
                  3nj7 C  1 GGCAGCAGCC 10
                                    10


Chain D from PDB  Type:RNA  Length:10
                                         
                  3nj7 D  1 GGCAGCAGCC 10
                                    10


Chain E from PDB  Type:RNA  Length:10
                                         
                  3nj7 E  1 GGCAGCAGCC 10
                                    10


Chain F from PDB  Type:RNA  Length:10
                                         
                  3nj7 F  1 GGCAGCAGCC 10
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NJ7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NJ7)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  3nj7
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(-) Related Entries Specified in the PDB File

3nj6 0.95 A RESOLUTION X-RAY STRUCTURE OF (GGCAGCAGCC)2