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(-) Description

Title :  CRYSTAL STRUCTURE OF FLUORINE AND METHYL MODIFIED COLLAGEN: (MEPFLPGLY)7
 
Authors :  K. A. Satyshur, M. D. Shoulders, R. T. Raines, K. T. Forest
Date :  18 Aug 09  (Deposition) - 02 Feb 10  (Release) - 02 Feb 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.21
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Collagen, Fluorinated Methylated Collagen, Nonnatural Amino Acid, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Shoulders, K. A. Satyshur, K. T. Forest, R. T. Raines
Stereoelectronic And Steric Effects In Side Chains Preorganize A Protein Main Chain.
Proc. Natl. Acad. Sci. Usa V. 107 559 2010
PubMed-ID: 20080719  |  Reference-DOI: 10.1073/PNAS.0909592107

(-) Compounds

Molecule 1 - NON-NATURAL COLLAGEN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED FROM MODIFIED AMINO ACIDS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 86)

Asymmetric Unit (3, 86)
No.NameCountTypeFull Name
1CO34Ligand/IonCARBONATE ION
2FP941Mod. Amino Acid(4R)-4-FLUORO-L-PROLINE
3MP841Mod. Amino Acid(4R)-4-METHYL-L-PROLINE
Biological Unit 1 (3, 43)
No.NameCountTypeFull Name
1CO32Ligand/IonCARBONATE ION
2FP920Mod. Amino Acid(4R)-4-FLUORO-L-PROLINE
3MP821Mod. Amino Acid(4R)-4-METHYL-L-PROLINE
Biological Unit 2 (3, 43)
No.NameCountTypeFull Name
1CO32Ligand/IonCARBONATE ION
2FP921Mod. Amino Acid(4R)-4-FLUORO-L-PROLINE
3MP820Mod. Amino Acid(4R)-4-METHYL-L-PROLINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:6 , MP8 A:7 , FP9 A:8 , HOH A:25 , HOH A:33 , HOH A:46 , HOH A:91 , MP8 C:7BINDING SITE FOR RESIDUE CO3 A 201
2AC2SOFTWAREHOH A:27 , GLY B:6 , MP8 B:7 , HOH B:23 , HOH B:25 , HOH B:41BINDING SITE FOR RESIDUE CO3 B 203
3AC3SOFTWAREGLY D:6 , MP8 D:7 , HOH D:51 , HOH D:61 , HOH D:63 , HOH D:86BINDING SITE FOR RESIDUE CO3 D 202
4AC4SOFTWAREGLY F:12 , MP8 F:13 , HOH F:22 , HOH F:24 , HOH F:26 , HOH F:35BINDING SITE FOR RESIDUE CO3 F 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IPN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3IPN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IPN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IPN)

(-) Exons   (0, 0)

(no "Exon" information available for 3IPN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:20
                                                   
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .................... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                  3ipn A  1 ppGppGppGppGppGppGpp 20
                            || || ||10| || || 20
                            || || || || 14-FP9||
                            1-MP8 || || | 16-MP8
                             2-FP9|| || |  17-FP9
                               4-MP8 || |    19-MP8
                                5-FP9|| |     20-FP9
                                  7-MP8 |       
                                   8-FP9|       
                                    10-MP8      
                                     11-FP9     


Chain B from PDB  Type:PROTEIN  Length:19
                                                  
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  3ipn B  1 ppGppGppGppGppGppGp 19
                            || || ||10| || || |
                            || || || || 14-FP9|
                            1-MP8 || || | 16-MP8
                             2-FP9|| || |  17-FP9
                               4-MP8 || |    19-MP8
                                5-FP9|| |      
                                  7-MP8 |      
                                   8-FP9|      
                                    10-MP8     
                                     11-FP9    


Chain C from PDB  Type:PROTEIN  Length:20
                                                   
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .................... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                  3ipn C  1 ppGppGppGppGppGppGpp 20
                            || || ||10| || || 20
                            || || || || 14-FP9||
                            1-MP8 || || | 16-MP8
                             2-FP9|| || |  17-FP9
                               4-MP8 || |    19-MP8
                                5-FP9|| |     20-FP9
                                  7-MP8 |       
                                   8-FP9|       
                                    10-MP8      
                                     11-FP9     


Chain D from PDB  Type:PROTEIN  Length:19
                                                  
               SCOP domains ------------------- SCOP domains
               CATH domains ------------------- CATH domains
               Pfam domains ------------------- Pfam domains
         Sec.struct. author ................... Sec.struct. author
                 SAPs(SNPs) ------------------- SAPs(SNPs)
                    PROSITE ------------------- PROSITE
                 Transcript ------------------- Transcript
                  3ipn D  2 pGppGppGppGppGppGpp 20
                            | || || 11 || || ||
                            | || || || 14-FP9||
                            2-FP9|| || | 16-MP8
                              4-MP8 || |  17-FP9
                               5-FP9|| |    19-MP8
                                 7-MP8 |     20-FP9
                                  8-FP9|       
                                   10-MP8      
                                    11-FP9     
                                      13-MP8   


Chain E from PDB  Type:PROTEIN  Length:20
                                                   
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .................... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                  3ipn E  1 ppGppGppGppGppGppGpp 20
                            || || ||10| || || 20
                            || || || || 14-FP9||
                            1-MP8 || || | 16-MP8
                             2-FP9|| || |  17-FP9
                               4-MP8 || |    19-MP8
                                5-FP9|| |     20-FP9
                                  7-MP8 |       
                                   8-FP9|       
                                    10-MP8      
                                     11-FP9     


Chain F from PDB  Type:PROTEIN  Length:20
                                                   
               SCOP domains -------------------- SCOP domains
               CATH domains -------------------- CATH domains
               Pfam domains -------------------- Pfam domains
         Sec.struct. author .................... Sec.struct. author
                 SAPs(SNPs) -------------------- SAPs(SNPs)
                    PROSITE -------------------- PROSITE
                 Transcript -------------------- Transcript
                  3ipn F  1 ppGppGppGppGppGppGpp 20
                            || || ||10| || || 20
                            || || || || 14-FP9||
                            1-MP8 || || | 16-MP8
                             2-FP9|| || |  17-FP9
                               4-MP8 || |    19-MP8
                                5-FP9|| |     20-FP9
                                  7-MP8 |       
                                   8-FP9|       
                                    10-MP8      
                                     11-FP9
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3IPN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IPN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IPN)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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