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(-) Description

Title :  CRYSTAL STRUCTURE OF LP_1913 PROTEIN FROM LACTOBACILLUS PLANTARUM, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LPR140A
 
Authors :  J. Seetharaman, Y. Chen, F. Forouhar, S. Sahdev, H. Janjua, R. Xiao, C. Ciccosanti, E. L. Foote, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  30 Jun 09  (Deposition) - 21 Jul 09  (Release) - 21 Jul 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Lactobacillus Plantarum, Lp_1913, Structural Genomics, Psi- 2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, Y. Chen, F. Forouhar, S. Sahdev, H. Janjua, R. Xiao, C. Ciccosanti, E. L. Foote, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Lp_1913 Protein From Lactobacillus Plantarum, Northeast Structural Genomics Consortium Target Lpr140A
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN LP_1913
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LP_1913
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3I3U)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3I3U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3I3U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3I3U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3I3U)

(-) Exons   (0, 0)

(no "Exon" information available for 3I3U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:82
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELA 104
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eehhhhhhhhh------.ee......---------......hhhhhh...........eee------hhhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3i3u A   2 NDKKIELLTTYLSLYIDHHTVLADm------YVVLDVRNA---------KGAIAmPAKDLATRIGELDPAKTYVV------TTLGKTALLVLLSAGFEAYELA 104
                                    11        21    |    - |      41        51    |   61        71    |    - |      91       101   
                                                   26-MSE 33      41        51    |                  76     83                     
                                                                                 56-MSE                                            


Chain B from PDB  Type:PROTEIN  Length:86
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELA 104
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eehhhhhh...-----.eeeee....--------.......hhhhhh.hhhhh....eeeee.----.hhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3i3u B   2 NDKKIELLTTYLSLYIDHHTVLADm-----KYVVLDVRNA--------IKGAIAmPAKDLATRIGELDPAKTYVVYD----TTLGKTALLVLLSAGFEAYELA 104
                                    11        21    |    -|       41        51    |   61        71      |  - |      91       101   
                                                   26-MSE32       41       50     |                    78   83                     
                                                                                 56-MSE                                            


Chain C from PDB  Type:PROTEIN  Length:84
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELA 104
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eehhhhhhhhh-----.eeeee...--------.....ee.hhhhhh..........eeee.------hhhhhhhhhhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3i3u C   2 NDKKIELLTTYLSLYIDHHTVLADm-----KYVVLDVRN--------QIKGAIAmPAKDLATRIGELDPAKTYVVY------TLGKTALLVLLSAGFEAYELA 104
                                    11        21    |    -|       |-       |51    |   61        71     |   -  |     91       101   
                                                   26-MSE32      40       49     56-MSE               77     84                    


Chain D from PDB  Type:PROTEIN  Length:87
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELA 104
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eehhhhhhhhh-----.eeeee......------....ee.hhhhhh..........eeeee-----hhhhhhhhhhhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3i3u D   2 NDKKIELLTTYLSLYIDHHTVLADm-----KYVVLDVRNAPA------IKGAIAmPAKDLATRIGELDPAKTYVVY-----TTLGKTALLVLLSAGFEAYELA 104
                                    11        21    |    -|       41 |      51    |   61        71     |   - |      91       101   
                                                   26-MSE32         43     50     |                   77    83                     
                                                                                 56-MSE                                            


Chain E from PDB  Type:PROTEIN  Length:82
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELA 104
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.ee---hhhhhh-----.eeeee....----------..ee.hhhhhh..........eeeee..---hhhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3i3u E   2 NDKKIELLTTYLSLYI---TVLADm-----KYVVLDVRNA----------GAIAmPAKDLATRIGELDPAKTYVVYDW---TTLGKTALLVLLSAGFEAYELA 104
                                    11     |  21    |    -|       41         -|   |   61        71       | - |      91       101   
                                          17  21    |    32       41         52   |                     79  83                     
                                                   26-MSE                        56-MSE                                            


Chain F from PDB  Type:PROTEIN  Length:86
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELA 104
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeehhhhhh..---...eeeee...---------....ee.hhhhhh.hhhhh....eeeee.-----hhhhhhhhhhhhhh..eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3i3u F   2 NDKKIELLTTYLSLYIDHHTVLADm---TGKYVVLDVRN---------IKGAIAmPAKDLATRIGELDPAKTYVVYD-----TLGKTALLVLLSAGFEAYELA 104
                                    11        21    |   31        |-        51    |   61        71      |  -  |     91       101   
                                                   26-MSE        40        50     |                    78    84                    
                                                                                 56-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3I3U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3I3U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3I3U)

(-) Gene Ontology  (0, 0)

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