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(-) Description

Title :  CRYSTAL STRUCTURE OF LP_1913 PROTEIN FROM LACTOBACILLUS PLANTARUM,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LPR140B
 
Authors :  J. Seetharaman, Y. Chen, F. Forouhar, S. Sahdev, E. L. Foote, C. Ciccosanti, R. L. Belote, J. K. Everett, R. Nair, T. B. Acton, B. Rost G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  18 Dec 08  (Deposition) - 13 Jan 09  (Release) - 13 Jan 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, Y. Chen, F. Forouhar, S. Sahdev, E. L. Foote, C. Ciccosanti, R. L. Belote, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Lp_1913 Protein From Lactobacillus Plantarum, Northeast Structural Genomics Consortium Target Lpr140B
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN LP_1913
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LP_1913
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590
    Strain: WCFS1

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1BR1Ligand/IonBROMIDE ION
2MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:40 , ALA A:41 , TRP A:79 , LEU A:85 , HOH A:338BINDING SITE FOR RESIDUE BR A 151

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FLH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FLH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FLH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FLH)

(-) Exons   (0, 0)

(no "Exon" information available for 3FLH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:119
                                    10        20        30        40        50        60        70        80        90       100       110         
         F9UPN6_LACPL     1 MNDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPVET 119
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eehhhhhhhhhhh....eeeee....hhhhhh.ee...ee.hhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhh.eeeee.hhhhhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 3flh A   1 mNDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRNAPAQVKKDQIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGmQLPLEH 119
                            |       10        20     |  30        40        50     |  60        70        80        90       100       110  |      
                            |                       26-MSE                        56-MSE                                                  113-MSE  
                            1-MSE                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:121
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:121
                                    11        21        31        41        51        61        71        81        91       101       111       121 
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPVETLAD 122
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eehhhhhhhhhhh....eeeee..hhhhhhhh......ee.hhhhhhhhhhhh....eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3flh B   2 NDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRNAPAQVKKDQIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGmQLPLEHHHH 122
                                    11        21    |   31        41        51    |   61        71        81        91       101       111 |     121 
                                                   26-MSE                        56-MSE                                                  113-MSE     


Chain C from PDB  Type:PROTEIN  Length:95
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:103
                                    11        21        31        41        51        61        71        81        91       101   
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELA 104
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhheeehhhhhhhhhh....eeeee...--------.....ee.hhhhhhhhhhhh....eeeee......hhhhhhhhhhhhh...eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 3flh C   2 NDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRN--------QIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELA 104
                                    11        21    |   31        |-       |51    |   61        71        81        91       101   
                                                   26-MSE        40       49     56-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FLH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FLH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FLH)

(-) Gene Ontology  (0, 0)

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