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(-) Description

Title :  LOCATING MONOVALENT CATIONS IN ONE TURN OF G/C RICH B-DNA
 
Authors :  T. Maehigashi, T. Moulaei, D. Watkins, S. Komeda, L. D. Williams
Date :  28 Feb 09  (Deposition) - 09 Mar 10  (Release) - 09 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.87
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Dna, Cations, Divalent Cations, Monovalent Cations, Rubidium Ion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Maehigashi, T. Moulaei, D. Watkins, S. Komeda, L. D. Williams
Locating Monovalent Cations In One Turn Of G/C Rich B-Dna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3'
    Chains: A
    Engineered: YES
    Other Details: SYNTHETIC CONSTRUCT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1MG5Ligand/IonMAGNESIUM ION
2RB2Ligand/IonRUBIDIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2RB-1Ligand/IonRUBIDIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:292 , HOH A:293 , HOH A:294 , HOH A:295 , HOH A:296 , HOH A:297BINDING SITE FOR RESIDUE MG A 21
2AC2SOFTWARERB A:102 , HOH A:260 , HOH A:269 , HOH A:270 , HOH A:277 , HOH A:282 , HOH A:283 , HOH A:298 , HOH A:299 , HOH A:300 , HOH A:301 , HOH A:302 , HOH A:303BINDING SITE FOR RESIDUE MG A 22
3AC3SOFTWAREHOH A:266 , HOH A:304 , HOH A:305 , HOH A:306 , HOH A:307 , HOH A:308 , HOH A:309BINDING SITE FOR RESIDUE MG A 23
4AC4SOFTWAREHOH A:239 , HOH A:261 , HOH A:268 , HOH A:273 , HOH A:275 , HOH A:276 , HOH A:291 , HOH A:310 , HOH A:311 , HOH A:312 , HOH A:313 , HOH A:314 , HOH A:315BINDING SITE FOR RESIDUE MG A 24
5AC5SOFTWAREHOH A:290 , HOH A:316 , HOH A:317 , HOH A:318 , HOH A:319 , HOH A:320 , HOH A:321BINDING SITE FOR RESIDUE MG A 25
6AC6SOFTWAREDG A:10 , RB A:102 , HOH A:260 , HOH A:282 , HOH A:299 , HOH A:301BINDING SITE FOR RESIDUE RB A 101
7AC7SOFTWAREDG A:9 , DG A:10 , MG A:22 , RB A:101 , HOH A:238 , HOH A:269 , HOH A:299 , HOH A:301 , HOH A:302BINDING SITE FOR RESIDUE RB A 102

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  3ggk A  1 CCAGGCCTGG 10
                                    10
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(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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(-) Related Entries Specified in the PDB File

3ggb NA FORM OF D(CCAGGCCTGG)2
3ggi TL FORM OF D(CCAGGCCTGG)2