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(-) Description

Title :  CRYSTAL STRUCTURE OF ONE TURN OF G/C RICH B-DNA REVISITED
 
Authors :  T. Maehigashi, K. K. Woods, T. Moulaei, S. Komeda, L. D. Williams
Date :  16 Oct 11  (Deposition) - 09 Nov 11  (Release) - 17 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.96
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  B-Dna, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Maehigashi, C. Hsiao, K. K. Woods, T. Moulaei, N. V. Hud, L. D. Williams
B-Dna Structure Is Intrinsically Polymorphic: Even At The Level Of Base Pair Positions.
Nucleic Acids Res. V. 40 3714 2012
PubMed-ID: 22180536  |  Reference-DOI: 10.1093/NAR/GKR1168

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3'
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1MG5Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:283 , HOH A:284 , HOH A:285 , HOH A:286 , HOH A:287 , HOH A:288BINDING SITE FOR RESIDUE MG A 21
2AC2SOFTWAREHOH A:267 , HOH A:272 , HOH A:278 , HOH A:281 , HOH A:289 , HOH A:290 , HOH A:291 , HOH A:292 , HOH A:293 , HOH A:294BINDING SITE FOR RESIDUE MG A 22
3AC3SOFTWAREHOH A:256 , HOH A:264 , HOH A:295 , HOH A:296 , HOH A:297 , HOH A:298 , HOH A:299 , HOH A:300BINDING SITE FOR RESIDUE MG A 23
4AC4SOFTWAREHOH A:255 , HOH A:257 , HOH A:268 , HOH A:269 , HOH A:270 , HOH A:271 , HOH A:282 , HOH A:301 , HOH A:302 , HOH A:303 , HOH A:304 , HOH A:305 , HOH A:306BINDING SITE FOR RESIDUE MG A 24
5AC5SOFTWAREHOH A:307 , HOH A:308 , HOH A:309 , HOH A:310 , HOH A:311 , HOH A:312BINDING SITE FOR RESIDUE MG A 25

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3U89)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3U89)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3U89)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  3u89 A  1 CCAGGCCTGG 10
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3U89)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U89)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U89)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3U89)

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  3u89
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3ggi THALLIUM FORM OF D(CCAGGCCTGG)2
3ggk RUBIDIUM FORM OF D(CCAGGCCTGG)2