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(-) Description

Title :  LOCATING MONOVALENT CATIONS IN ONE TURN OF G/C RICH B-DNA
 
Authors :  T. Maehigashi, T. Moulaei, D. Watkins, S. Komeda, L. D. Williams
Date :  28 Feb 09  (Deposition) - 09 Mar 10  (Release) - 09 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.98
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Dna, Cations, Divalent Cations, Monovalent Cations, Thallium Ion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Maehigashi, T. Moulaei, D. Watkins, S. Komeda, L. D. Williams
Locating Monovalent Cations In One Turn Of G/C Rich B-Dna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3'
    Chains: A
    Engineered: YES
    Other Details: SYNTHETIC CONSTRUCT
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1MG5Ligand/IonMAGNESIUM ION
2TL6Ligand/IonTHALLIUM (I) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TL-1Ligand/IonTHALLIUM (I) ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:277 , HOH A:278 , HOH A:279 , HOH A:280 , HOH A:281 , HOH A:282BINDING SITE FOR RESIDUE MG A 21
02AC2SOFTWARETL A:101 , TL A:104 , HOH A:259 , HOH A:267 , HOH A:283 , HOH A:284 , HOH A:285 , HOH A:286 , HOH A:287 , HOH A:288BINDING SITE FOR RESIDUE MG A 22
03AC3SOFTWAREHOH A:289 , HOH A:290 , HOH A:291 , HOH A:292 , HOH A:293 , HOH A:294BINDING SITE FOR RESIDUE MG A 23
04AC4SOFTWAREHOH A:236 , HOH A:240 , HOH A:241 , HOH A:265 , HOH A:274 , HOH A:275 , HOH A:276 , HOH A:295 , HOH A:296 , HOH A:297 , HOH A:298 , HOH A:299 , HOH A:300BINDING SITE FOR RESIDUE MG A 24
05AC5SOFTWAREHOH A:301 , HOH A:302 , HOH A:303 , HOH A:304 , HOH A:305 , HOH A:306BINDING SITE FOR RESIDUE MG A 25
06AC6SOFTWAREDG A:9 , DG A:10 , MG A:22 , TL A:104 , TL A:105 , HOH A:259 , HOH A:261 , HOH A:284 , HOH A:287BINDING SITE FOR RESIDUE TL A 101
07AC7SOFTWAREDA A:3 , DG A:4 , HOH A:278 , HOH A:279 , HOH A:282BINDING SITE FOR RESIDUE TL A 102
08AC8SOFTWAREDG A:4 , DG A:5 , DC A:6 , HOH A:238BINDING SITE FOR RESIDUE TL A 103
09AC9SOFTWAREDG A:9 , DG A:10 , MG A:22 , TL A:101 , TL A:105 , HOH A:287BINDING SITE FOR RESIDUE TL A 104
10BC1SOFTWAREDG A:10 , TL A:101 , TL A:104 , HOH A:284 , HOH A:287BINDING SITE FOR RESIDUE TL A 105
11BC2SOFTWAREDT A:8 , DG A:9 , HOH A:236 , HOH A:274 , HOH A:295 , HOH A:296 , HOH A:297 , HOH A:298 , HOH A:299 , HOH A:300BINDING SITE FOR RESIDUE TL A 106

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GGI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GGI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GGI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GGI)

(-) Exons   (0, 0)

(no "Exon" information available for 3GGI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  3ggi A  1 CCAGGCCTGG 10
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GGI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GGI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GGI)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

3ggb NA FORM OF D(CCAGGCCTGG)2
3ggk TL FORM OF D(CCAGGCCTGG)2