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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ORF131 L26M L51M DOUBLE MUTANT FROM SULFOLOBUS ISLANDICUS RUDIVIRUS 1
 
Authors :  M. Oke, L. G. Carter, K. A. Johnson, H. Liu, S. A. Mcmahon, J. H. Naismith, M. F. White
Date :  08 Feb 10  (Deposition) - 21 Jul 10  (Release) - 21 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Oke, L. G. Carter, K. A. Johnson, H. Liu, S. A. Mcmahon, X. Yan, M. Kerou, N. D. Weikart, N. Kadi, M. A. Sheikh, S. Schmelz, M. Dorward, M. Zawadzki, C. Cozens, H. Falconer, H. Powers, I. M. Overton, C. A. J. Van Niekerk, X. Peng, P. Patel, R. A. Garrett, D. Prangishvili C. H. Botting, P. J. Coote, D. T. F. Dryden, G. J. Barton, U. Schwarz-Linek, G. L. Challis, G. L. Taylor, M. F. White, J. H. Naismith
The Scottish Structural Proteomics Facility: Targets, Methods And Outputs.
J. Struct. Funct. Genom. V. 11 167 2010
PubMed-ID: 20419351  |  Reference-DOI: 10.1007/S10969-010-9090-Y

(-) Compounds

Molecule 1 - ORF 131
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST14
    Expression System Taxid: 511693
    Expression System Variant: BL21
    Fragment: TRUNCATED VERSION, RESIDUES 1-96
    Mutation: YES
    Organism Scientific: SULFOLOBUS ISLANDICUS RUDIVIRUS 1
    Organism Taxid: 282066
    Synonym: UNCHARACTERIZED PROTEIN 131, CAG38830
    Variant: XX

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:33 , HOH A:2114 , HOH A:2115 , HOH A:2116 , LYS B:32BINDING SITE FOR RESIDUE SO4 A1092

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2X5H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2X5H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2X5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2X5H)

(-) Exons   (0, 0)

(no "Exon" information available for 2X5H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
 aligned with Y131_SIRV1 | Q8QL44 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:92
                             1                                                                                          
                             |       9        19        29        39        49        59        69        79        89  
            Y131_SIRV1    - -MASLKEIIDELGKQAKEQNKIASRILKIKGIKRIVVQLNAVPQDGKIRYSLTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYV 91
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh..eeee........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  2x5h A  0 GMASLKEIIDELGKQAKEQNKIASRIMKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYV 91
                                     9        19        29        39        49        59        69        79        89  


Chain B from PDB  Type:PROTEIN  Length:92
 aligned with Y131_SIRV1 | Q8QL44 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:92
                             1                                                                                          
                             |       9        19        29        39        49        59        69        79        89  
            Y131_SIRV1    - -MASLKEIIDELGKQAKEQNKIASRILKIKGIKRIVVQLNAVPQDGKIRYSLTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYV 91
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh..eeee........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  2x5h B  0 GMASLKEIIDELGKQAKEQNKIASRIMKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYV 91
                                     9        19        29        39        49        59        69        79        89  


Chain C from PDB  Type:PROTEIN  Length:93
 aligned with Y131_SIRV1 | Q8QL44 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:93
                                    11        21        31        41        51        61        71        81        91   
            Y131_SIRV1    2 ASLKEIIDELGKQAKEQNKIASRILKIKGIKRIVVQLNAVPQDGKIRYSLTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYVKFT 94
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..eeee........eeeeeeeeee..eeeeeeeeee......eeeehhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  2x5h C  2 ASLKEIIDELGKQAKEQNKIASRIMKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYVKFT 94
                                    11        21        31        41        51        61        71        81        91   


Chain D from PDB  Type:PROTEIN  Length:94
 aligned with Y131_SIRV1 | Q8QL44 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:94
                                    10        20        30        40        50        60        70        80        90    
            Y131_SIRV1    1 MASLKEIIDELGKQAKEQNKIASRILKIKGIKRIVVQLNAVPQDGKIRYSLTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYVKFT 94
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..eeee.........eeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  2x5h D  1 MASLKEIIDELGKQAKEQNKIASRIMKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAEDLKLIAEFLEKYSDFLNEYVKFT 94
                                    10        20        30        40        50        60        70        80        90
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2X5H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2X5H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2X5H)

(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y131_SIRV1 | Q8QL44: 2x5g 2x5t

(-) Related Entries Specified in the PDB File

2x5g CRYSTAL STRUCTURE OF THE ORF131L51M MUTANT FROM SULFOLOBUS ISLANDICUS RUDIVIRUS 1