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(-) Description

Title :  THREE CONSECUTIVE SHEARED GA PAIRS IN 5'GGUGGAGGCU/3'PCCAAAGCCG
 
Authors :  G. Chen, S. D. Kennedy, T. R. Krugh, D. H. Turner
Date :  19 Jan 06  (Deposition) - 13 Jun 06  (Release) - 21 Jul 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (24x)
Keywords :  Three Consecutive Sheared Ga Pairs, Thermodynamics Of Molecular Recognition, K-Turn Motif, A-Minor Motif, Secondary Structure Of Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Chen, S. D. Kennedy, J. Qiao, T. R. Krugh, D. H. Turner
An Alternating Sheared Aa Pair And Elements Of Stability For A Single Sheared Purine-Purine Pair Flanked By Sheared Ga Pairs In Rna
Biochemistry V. 45 6889 2006
PubMed-ID: 16734425  |  Reference-DOI: 10.1021/BI0524464
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
    ChainsA
    EngineeredYES
    SyntheticYES
 
Molecule 2 - 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3'
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (24x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1P5P1Mod. NucleotidePURINE RIBOSIDE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:10
                                         
                  2dd1 A  1 GGUGGAGGCU 10
                                    10

Chain B from PDB  Type:RNA  Length:10
                                         
                  2dd1 B 11 GCCGAAACCa 20
                                    20
                                    20-P5P

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1xv0 3 SHEARED GA PAIRS CLOSED BY UG WOBBLE AND CG WC PAIRS, 5' GGUGGAGGCU/3'PCCGAAGCCG
2dd2 5'GGUGGAGGCU/3'PCCAAAGCCG
2dd3 A SINGLE SHEARED PURINE-PURINE PAIR FLANKED BY SHEARED GA PAIRS, 5'GGUGAAGGCU/3'PCCGAAGCCG