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Sequence, Chains, Asymmetric and Biological Units

Title THREE CONSECUTIVE SHEARED GA PAIRS IN 5'GGUGGAGGCU/3'PCCAAAGCCG
Keywords THREE CONSECUTIVE SHEARED GA PAIRS, THERMODYNAMICS OF MOLECULAR RECOGNITION, K-TURN MOTIF, A-MINOR MOTIF, SECONDARY STRUCTURE OF RNA
Experiment NMR
Number of Models  24


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   2DD1     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 10 327 0
2  RNA    B 10 289 32
total       20 616 32

Nucleic acids
Unit 1 G1 G2 U3 G4 G5 A6 G7 G8 C9 U10
Unit 2 G11 C12 C13 G14 A15 A16 A17 C18 C19 P5P20

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany